Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003351A_C01 KMC003351A_c01
(684 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB95829.1| hypothetical protein [Cicer arietinum] 180 2e-44
dbj|BAB86220.1| contains ESTs AU093915(E1276),AU162319(E60301)~s... 180 2e-44
ref|NP_177360.1| cytosolic factor, putative; protein id: At1g721... 167 1e-40
ref|NP_173669.1| unknown protein; protein id: At1g22530.1 [Arabi... 155 5e-37
ref|NP_177361.1| cytosolic factor, putative; protein id: At1g721... 149 3e-35
>emb|CAB95829.1| hypothetical protein [Cicer arietinum]
Length = 482
Score = 180 bits (456), Expect = 2e-44
Identities = 85/127 (66%), Positives = 107/127 (83%), Gaps = 2/127 (1%)
Frame = -1
Query: 684 RYIAPEQLPVKYGGLSKDG--EFENSEAVTEITIRPAAKHTVEFPVTEKCLLSWELRVIG 511
+YIAPEQ+PV+YGGLS++G EF ++ TE+TI+PA KH VEFP+ EK L WE+RV+G
Sbjct: 351 KYIAPEQVPVQYGGLSREGDQEFTTADPATEVTIKPATKHAVEFPIPEKSTLVWEVRVVG 410
Query: 510 WDISYGAEFVPSSEGSYTVIVQKDRKVASSEEPVLFNSFKIEEPGKVVLTINNTSSKKKK 331
WD+SYGAEFVPS+E YTVIVQK+RK+A ++E V+ N+FKI EPGKVVLTI+N +SKKKK
Sbjct: 411 WDVSYGAEFVPSAEDGYTVIVQKNRKIAPADETVINNTFKIGEPGKVVLTIDNQTSKKKK 470
Query: 330 LLYRLKT 310
LLYR KT
Sbjct: 471 LLYRSKT 477
>dbj|BAB86220.1| contains ESTs AU093915(E1276),AU162319(E60301)~similar to cytosolic
factor~unknown protein [Oryza sativa (japonica
cultivar-group)] gi|20804751|dbj|BAB92436.1| P0698A10.6
[Oryza sativa (japonica cultivar-group)]
Length = 613
Score = 180 bits (456), Expect = 2e-44
Identities = 86/130 (66%), Positives = 106/130 (81%), Gaps = 2/130 (1%)
Frame = -1
Query: 684 RYIAPEQLPVKYGGLSK--DGEFENSEAVTEITIRPAAKHTVEFPVTEKCLLSWELRVIG 511
RYIAPEQ+PV++GGL K D EF S+AVTE+TI+P++K TVE PVTE + WELRV+G
Sbjct: 480 RYIAPEQVPVQFGGLFKEDDPEFTTSDAVTELTIKPSSKETVEIPVTENSTIGWELRVLG 539
Query: 510 WDISYGAEFVPSSEGSYTVIVQKDRKVASSEEPVLFNSFKIEEPGKVVLTINNTSSKKKK 331
W++SYGAEF P +EG YTVIVQK RKV ++EEP++ SFK+ EPGK+VLTINN +SKKKK
Sbjct: 540 WEVSYGAEFTPDAEGGYTVIVQKTRKVPANEEPIMKGSFKVGEPGKIVLTINNPASKKKK 599
Query: 330 LLYRLKTKLT 301
LLYR K K T
Sbjct: 600 LLYRSKVKST 609
>ref|NP_177360.1| cytosolic factor, putative; protein id: At1g72150.1, supported by
cDNA: gi_15028180, supported by cDNA: gi_21280860
[Arabidopsis thaliana] gi|25406149|pir||H96744 probable
cytosolic factor T9N14.1 [imported] - Arabidopsis
thaliana gi|12323660|gb|AAG51793.1|AC067754_9 cytosolic
factor, putative; 12503-14597 [Arabidopsis thaliana]
gi|15028181|gb|AAK76587.1| putative cytosolic factor
[Arabidopsis thaliana] gi|21280861|gb|AAM44913.1|
putative cytosolic factor protein [Arabidopsis thaliana]
Length = 573
Score = 167 bits (423), Expect = 1e-40
Identities = 77/126 (61%), Positives = 102/126 (80%)
Frame = -1
Query: 684 RYIAPEQLPVKYGGLSKDGEFENSEAVTEITIRPAAKHTVEFPVTEKCLLSWELRVIGWD 505
+YIAPEQ+PVKYGGLSKD E +TE ++PAA +T+E P +E C LSWELRV+G D
Sbjct: 449 KYIAPEQVPVKYGGLSKDTPL-TEETITEAIVKPAANYTIELPASEACTLSWELRVLGAD 507
Query: 504 ISYGAEFVPSSEGSYTVIVQKDRKVASSEEPVLFNSFKIEEPGKVVLTINNTSSKKKKLL 325
+SYGA+F P++EGSY VIV K RK+ S++EPV+ +SFK+ EPGK+V+TI+N +SKKKK+L
Sbjct: 508 VSYGAQFEPTTEGSYAVIVSKTRKIGSTDEPVITDSFKVGEPGKIVITIDNQTSKKKKVL 567
Query: 324 YRLKTK 307
YR KT+
Sbjct: 568 YRFKTQ 573
>ref|NP_173669.1| unknown protein; protein id: At1g22530.1 [Arabidopsis thaliana]
gi|25511657|pir||E86358 F12K8.13 protein - Arabidopsis
thaliana gi|6587836|gb|AAF18525.1|AC006551_11 Unknown
protein [Arabidopsis thaliana]
gi|20268782|gb|AAM14094.1| unknown protein [Arabidopsis
thaliana] gi|22136800|gb|AAM91744.1| unknown protein
[Arabidopsis thaliana]
Length = 683
Score = 155 bits (392), Expect = 5e-37
Identities = 73/126 (57%), Positives = 97/126 (76%)
Frame = -1
Query: 684 RYIAPEQLPVKYGGLSKDGEFENSEAVTEITIRPAAKHTVEFPVTEKCLLSWELRVIGWD 505
+Y+APE +PVKYGGLSKD F + VTE ++ +K+T++ P TE LSWELRV+G D
Sbjct: 557 KYVAPEVVPVKYGGLSKDSPFTVEDGVTEAVVKSTSKYTIDLPATEGSTLSWELRVLGAD 616
Query: 504 ISYGAEFVPSSEGSYTVIVQKDRKVASSEEPVLFNSFKIEEPGKVVLTINNTSSKKKKLL 325
+SYGA+F PS+E SYTVIV K+RKV ++EPV+ +SFK E GKVV+TI+N + KKKK+L
Sbjct: 617 VSYGAQFEPSNEASYTVIVSKNRKVGLTDEPVITDSFKASEAGKVVITIDNQTFKKKKVL 676
Query: 324 YRLKTK 307
YR KT+
Sbjct: 677 YRSKTQ 682
>ref|NP_177361.1| cytosolic factor, putative; protein id: At1g72160.1, supported by
cDNA: gi_15081613 [Arabidopsis thaliana]
gi|25406150|pir||A96745 probable cytosolic factor
T9N14.8 [imported] - Arabidopsis thaliana
gi|12323663|gb|AAG51796.1|AC067754_12 cytosolic factor,
putative; 19554-17768 [Arabidopsis thaliana]
Length = 490
Score = 149 bits (377), Expect = 3e-35
Identities = 70/131 (53%), Positives = 97/131 (73%), Gaps = 5/131 (3%)
Frame = -1
Query: 684 RYIAPEQLPVKYGGLSKDG-----EFENSEAVTEITIRPAAKHTVEFPVTEKCLLSWELR 520
+YI+PEQ+PV+YGGLS D +F ++ +EIT++P K TVE + EKC L WE+R
Sbjct: 358 KYISPEQVPVQYGGLSVDPCDCNPDFSLEDSASEITVKPGTKQTVEIIIYEKCELVWEIR 417
Query: 519 VIGWDISYGAEFVPSSEGSYTVIVQKDRKVASSEEPVLFNSFKIEEPGKVVLTINNTSSK 340
V GW++SY AEFVP + +YTV++QK RK+ S+EPVL +SFK+ E GKV+LT++N +SK
Sbjct: 418 VTGWEVSYKAEFVPEEKDAYTVVIQKPRKMRPSDEPVLTHSFKVNELGKVLLTVDNPTSK 477
Query: 339 KKKLLYRLKTK 307
KKKL+YR K
Sbjct: 478 KKKLVYRFNVK 488
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,399,872
Number of Sequences: 1393205
Number of extensions: 12300795
Number of successful extensions: 37201
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 35603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37148
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
