Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003350A_C01 KMC003350A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178632.1| unknown protein; protein id: At2g05640.1 [Arabi... 119 8e-28
ref|NP_189796.1| putative protein; protein id: At3g42100.1 [Arab... 104 6e-27
gb|AAK54292.1|AC034258_10 putative helicase [Oryza sativa (japon... 114 2e-25
dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana] 96 3e-25
ref|NP_187933.1| hypothetical protein; protein id: At3g13250.1 [... 96 3e-25
>ref|NP_178632.1| unknown protein; protein id: At2g05640.1 [Arabidopsis thaliana]
gi|20197614|gb|AAM15154.1| unknown protein [Arabidopsis
thaliana] gi|20198162|gb|AAM15435.1| unknown protein
[Arabidopsis thaliana]
Length = 1308
Score = 119 bits (299), Expect(2) = 8e-28
Identities = 55/122 (45%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Frame = -1
Query: 590 MNANKKYQE---GRNLTYAEFPSEFLYNKKTTKWVPKKKRFSLGRLQFIAPGMGENYYMR 420
+ NKK E R TY EFPS F++ KK +W +++ S+GR+ + P G+ +Y+R
Sbjct: 615 LKTNKKIAEDPEARKFTYIEFPSHFVWKKKQMEWTLRQRSVSVGRVYHVTPSAGQRFYLR 674
Query: 419 VLLTMQKGCDSFKSIKTVKGVVYPTFHDACEAMGLLEDDREYVDGISISSEFGSGTQLRK 240
+LL KG ++ IKTV G++YPTF DAC A+ LLEDD+EY+D I +S++GSG +R+
Sbjct: 675 ILLNKVKGPTCYEDIKTVGGILYPTFKDACYALSLLEDDQEYIDTIIEASQWGSGRYMRR 734
Query: 239 LF 234
LF
Sbjct: 735 LF 736
Score = 25.8 bits (55), Expect(2) = 8e-28
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 235 FTRMLMTNLISRPQEVWRKSWSLLCD 158
F ++L + +S P VW +W+ L D
Sbjct: 736 FAQLLTSESLSTPYHVWLNTWNQLSD 761
>ref|NP_189796.1| putative protein; protein id: At3g42100.1 [Arabidopsis thaliana]
gi|11357786|pir||T48965 hypothetical protein F4M19.60 -
Arabidopsis thaliana gi|7801660|emb|CAB91581.1| putative
protein [Arabidopsis thaliana]
Length = 1752
Score = 104 bits (259), Expect(2) = 6e-27
Identities = 49/118 (41%), Positives = 74/118 (62%)
Frame = -1
Query: 587 NANKKYQEGRNLTYAEFPSEFLYNKKTTKWVPKKKRFSLGRLQFIAPGMGENYYMRVLLT 408
+ K + R L Y++ P+ F ++ K +WV + + FSLGR+ ++ M YY+RVLL
Sbjct: 1045 DVGKNGKRARELLYSQIPAYFTWDGKNKQWVKRIRGFSLGRINYVCRKMEVEYYLRVLLN 1104
Query: 407 MQKGCDSFKSIKTVKGVVYPTFHDACEAMGLLEDDREYVDGISISSEFGSGTQLRKLF 234
+ KG S+ IKT GVVYP+F +AC A G+L+DD+ Y+DG+ +S+F G LR F
Sbjct: 1105 IVKGPMSYDDIKTFNGVVYPSFKEACFARGILDDDQVYIDGLHEASQFCFGDYLRNFF 1162
Score = 38.1 bits (87), Expect(2) = 6e-27
Identities = 14/44 (31%), Positives = 28/44 (62%)
Frame = -2
Query: 241 NFFTRMLMTNLISRPQEVWRKSWSLLCDGILYDRRKTLNISDIQ 110
NFF +L+++ ++RP+ VW ++W LL + I +R+ D++
Sbjct: 1160 NFFAMLLLSDSLARPEHVWSETWHLLAEDIENKKREDFKNPDLK 1203
>gb|AAK54292.1|AC034258_10 putative helicase [Oryza sativa (japonica cultivar-group)]
Length = 1501
Score = 114 bits (286), Expect(2) = 2e-25
Identities = 50/119 (42%), Positives = 79/119 (66%)
Frame = -1
Query: 590 MNANKKYQEGRNLTYAEFPSEFLYNKKTTKWVPKKKRFSLGRLQFIAPGMGENYYMRVLL 411
M NK++++ R LTY+EFP+++ ++K KWV +K +GR+ P GE YY+RV+L
Sbjct: 850 METNKRHEDARELTYSEFPTKWTWDKNVKKWVRRKGGMKIGRIYNAHPASGERYYLRVIL 909
Query: 410 TMQKGCDSFKSIKTVKGVVYPTFHDACEAMGLLEDDREYVDGISISSEFGSGTQLRKLF 234
KGC +F+ I+TV G V+ ++ AC A+G L DD E+++ I +S + SG +LR+LF
Sbjct: 910 NTAKGCTTFEDIRTVNGTVHSSYKSACHALGFLNDDSEWIECIKEASCWASGMKLRQLF 968
Score = 22.7 bits (47), Expect(2) = 2e-25
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = -2
Query: 235 FTRMLMTNLISRPQEVWRKSWSLLCDGILYDRRKTLN 125
F +L ++ P+ +W SW L I + + LN
Sbjct: 968 FATVLCHCEVTDPKRLWESSWEKLSKDIQHTQSWALN 1004
>dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana]
Length = 1428
Score = 95.9 bits (237), Expect(2) = 3e-25
Identities = 45/115 (39%), Positives = 74/115 (64%)
Frame = -1
Query: 578 KKYQEGRNLTYAEFPSEFLYNKKTTKWVPKKKRFSLGRLQFIAPGMGENYYMRVLLTMQK 399
K + R+ YAE P+ F ++ + ++ + + FSLGR+ +++ M + YY+RVLL + +
Sbjct: 725 KNGKRARDCLYAEIPAYFTWDGENKQFKKRTRGFSLGRINYVSRKMEDEYYLRVLLNIVR 784
Query: 398 GCDSFKSIKTVKGVVYPTFHDACEAMGLLEDDREYVDGISISSEFGSGTQLRKLF 234
G S+ IKTV GVVYP++ AC A G+L+DD+ Y++G+ +S+F G LR F
Sbjct: 785 GPQSYDDIKTVNGVVYPSYKLACFARGILDDDQVYINGLIEASQFCFGDYLRNFF 839
Score = 40.8 bits (94), Expect(2) = 3e-25
Identities = 19/53 (35%), Positives = 33/53 (61%), Gaps = 7/53 (13%)
Frame = -2
Query: 241 NFFTRMLMTNLISRPQEVWRKSWSLLCDGILYDRRK-------TLNISDIQSF 104
NFF+ ML+++ ++RP+ VW ++W LL + IL +R TL + IQ++
Sbjct: 837 NFFSMMLLSDSLARPEHVWSETWHLLSEDILIKKRDEFKNQELTLTEAQIQNY 889
>ref|NP_187933.1| hypothetical protein; protein id: At3g13250.1 [Arabidopsis thaliana]
Length = 1419
Score = 95.9 bits (237), Expect(2) = 3e-25
Identities = 45/115 (39%), Positives = 74/115 (64%)
Frame = -1
Query: 578 KKYQEGRNLTYAEFPSEFLYNKKTTKWVPKKKRFSLGRLQFIAPGMGENYYMRVLLTMQK 399
K + R+ YAE P+ F ++ + ++ + + FSLGR+ +++ M + YY+RVLL + +
Sbjct: 716 KNGKRARDCLYAEIPAYFTWDGENKQFKKRTRGFSLGRINYVSRKMEDEYYLRVLLNIVR 775
Query: 398 GCDSFKSIKTVKGVVYPTFHDACEAMGLLEDDREYVDGISISSEFGSGTQLRKLF 234
G S+ IKTV GVVYP++ AC A G+L+DD+ Y++G+ +S+F G LR F
Sbjct: 776 GPQSYDDIKTVNGVVYPSYKLACFARGILDDDQVYINGLIEASQFCFGDYLRNFF 830
Score = 40.8 bits (94), Expect(2) = 3e-25
Identities = 19/53 (35%), Positives = 33/53 (61%), Gaps = 7/53 (13%)
Frame = -2
Query: 241 NFFTRMLMTNLISRPQEVWRKSWSLLCDGILYDRRK-------TLNISDIQSF 104
NFF+ ML+++ ++RP+ VW ++W LL + IL +R TL + IQ++
Sbjct: 828 NFFSMMLLSDSLARPEHVWSETWHLLSEDILIKKRDEFKNQELTLTEAQIQNY 880
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,244,963
Number of Sequences: 1393205
Number of extensions: 10955020
Number of successful extensions: 35651
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 34579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35633
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
