Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003347A_C01 KMC003347A_c01
(659 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178163.1| hypothetical protein; protein id: At1g80480.1 [... 225 4e-58
ref|NP_173025.1| PRLI-interacting factor L, putative; protein id... 213 2e-54
gb|AAG31652.1| PRLI-interacting factor L [Arabidopsis thaliana] 212 4e-54
ref|NP_485791.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 120 2e-26
ref|NP_419140.1| conserved hypothetical protein [Caulobacter cre... 119 4e-26
>ref|NP_178163.1| hypothetical protein; protein id: At1g80480.1 [Arabidopsis
thaliana] gi|25406668|pir||F96836 hypothetical protein
T21F11.27 [imported] - Arabidopsis thaliana
gi|6730739|gb|AAF27129.1|AC018849_17 hypothetical
protein; 58060-60358 [Arabidopsis thaliana]
Length = 444
Score = 225 bits (574), Expect = 4e-58
Identities = 106/129 (82%), Positives = 113/129 (87%), Gaps = 2/129 (1%)
Frame = -1
Query: 659 HDHHHHHHEDSLDHKHDHHDHH--SHDHTHDPGVSSVSIVCEGSLDLEKANFWLGTLLME 486
HDHHH H+ D H HD HDHH SHDHTHDPGVSSVSIVCEGSLDLEKAN WLGTLLME
Sbjct: 316 HDHHHDHNHDHDHHHHDGHDHHHHSHDHTHDPGVSSVSIVCEGSLDLEKANMWLGTLLME 375
Query: 485 RSEDIYRMKGLLSVQGMDERFVFQGVHDIFQGSPERLWGPDEPRTNKIVFIGKNLDAEEL 306
RSEDIYRMKGLLSV M+ERFVFQGVHDIFQGSP+RLWG +E R NKIVFIGKNL+ EEL
Sbjct: 376 RSEDIYRMKGLLSVHTMEERFVFQGVHDIFQGSPDRLWGREEERVNKIVFIGKNLNREEL 435
Query: 305 EKGFRACLL 279
EKGF+ACL+
Sbjct: 436 EKGFKACLI 444
>ref|NP_173025.1| PRLI-interacting factor L, putative; protein id: At1g15730.1,
supported by cDNA: gi_14194110, supported by cDNA:
gi_20334729 [Arabidopsis thaliana]
gi|25518551|pir||E86291 hypothetical protein F7H2.7
[imported] - Arabidopsis thaliana
gi|8927652|gb|AAF82143.1|AC034256_7 Contains similarity
to COBW-like protein from Homo sapiens gb|AF257330 and
contains a Viral (Superfamily 1) RNA helicase PF|01443
domain. EST gb|AI997977 comes from this genes.
[Arabidopsis thaliana]
gi|14194111|gb|AAK56250.1|AF367261_1 At1g15730/F7H2_7
[Arabidopsis thaliana] gi|20334730|gb|AAM16226.1|
At1g15730/F7H2_7 [Arabidopsis thaliana]
gi|23397243|gb|AAN31903.1| putative PRLI-interacting
factor L [Arabidopsis thaliana]
Length = 448
Score = 213 bits (542), Expect = 2e-54
Identities = 98/130 (75%), Positives = 109/130 (83%), Gaps = 4/130 (3%)
Frame = -1
Query: 656 DHHH----HHHEDSLDHKHDHHDHHSHDHTHDPGVSSVSIVCEGSLDLEKANFWLGTLLM 489
DHHH H H + +H+H+H HHSHDHTHDPGV SVSIVCEG LDLEKAN WLG LL
Sbjct: 319 DHHHGHDCHDHHNEHEHEHEHEHHHSHDHTHDPGVGSVSIVCEGDLDLEKANMWLGALLY 378
Query: 488 ERSEDIYRMKGLLSVQGMDERFVFQGVHDIFQGSPERLWGPDEPRTNKIVFIGKNLDAEE 309
+RSEDIYRMKG+LSVQ MDERFVFQGVH+IF+GSP+RLW DE RTNKIVFIGKNL+ EE
Sbjct: 379 QRSEDIYRMKGILSVQDMDERFVFQGVHEIFEGSPDRLWRKDETRTNKIVFIGKNLNREE 438
Query: 308 LEKGFRACLL 279
LE GFRACL+
Sbjct: 439 LEMGFRACLI 448
>gb|AAG31652.1| PRLI-interacting factor L [Arabidopsis thaliana]
Length = 245
Score = 212 bits (539), Expect = 4e-54
Identities = 97/130 (74%), Positives = 109/130 (83%), Gaps = 4/130 (3%)
Frame = -1
Query: 656 DHHH----HHHEDSLDHKHDHHDHHSHDHTHDPGVSSVSIVCEGSLDLEKANFWLGTLLM 489
DHHH H H + +H+H+H HHSHDHTHDPGV SVSIVCEG LDLEKAN WLG LL
Sbjct: 116 DHHHGHDCHDHHNEHEHEHEHEHHHSHDHTHDPGVGSVSIVCEGDLDLEKANMWLGALLY 175
Query: 488 ERSEDIYRMKGLLSVQGMDERFVFQGVHDIFQGSPERLWGPDEPRTNKIVFIGKNLDAEE 309
+R+EDIYRMKG+LSVQ MDERFVFQGVH+IF+GSP+RLW DE RTNKIVFIGKNL+ EE
Sbjct: 176 QRNEDIYRMKGILSVQDMDERFVFQGVHEIFEGSPDRLWRKDETRTNKIVFIGKNLNREE 235
Query: 308 LEKGFRACLL 279
LE GFRACL+
Sbjct: 236 LEMGFRACLI 245
>ref|NP_485791.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25318042|pir||AI2024
hypothetical protein all1751 [imported] - Nostoc sp.
(strain PCC 7120) gi|17130841|dbj|BAB73450.1|
ORF_ID:all1751~hypothetical protein [Nostoc sp. PCC
7120]
Length = 323
Score = 120 bits (301), Expect = 2e-26
Identities = 56/100 (56%), Positives = 72/100 (72%)
Frame = -1
Query: 584 HTHDPGVSSVSIVCEGSLDLEKANFWLGTLLMERSEDIYRMKGLLSVQGMDERFVFQGVH 405
H HD V SV++V EG LD EK N W+ LL + DI+RMKG+L++ G D RFVFQGVH
Sbjct: 222 HEHDDTVFSVALVQEGELDGEKLNAWISELLRTQGTDIFRMKGILNIAGEDNRFVFQGVH 281
Query: 404 DIFQGSPERLWGPDEPRTNKIVFIGKNLDAEELEKGFRAC 285
IF G P+RLW P+E R N++VFIG+NLD +L++ F AC
Sbjct: 282 MIFDGRPDRLWKPNEKRKNELVFIGRNLDEAQLKQDFLAC 321
>ref|NP_419140.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|25400532|pir||H87288 conserved hypothetical protein
CC0321 [imported] - Caulobacter crescentus
gi|13421466|gb|AAK22308.1| conserved hypothetical
protein [Caulobacter crescentus CB15]
Length = 365
Score = 119 bits (298), Expect = 4e-26
Identities = 56/128 (43%), Positives = 75/128 (57%), Gaps = 5/128 (3%)
Frame = -1
Query: 656 DHHHHHHEDSLDHKHDHHDHHSHDH-----THDPGVSSVSIVCEGSLDLEKANFWLGTLL 492
DHHHHH D + +H HDHH H H HD GV +S+ + +D +K WL LL
Sbjct: 235 DHHHHHDHDHVHDEHCGHDHHHHHHDHKSDVHDDGVKGISLTLDKPVDGQKITAWLNDLL 294
Query: 491 MERSEDIYRMKGLLSVQGMDERFVFQGVHDIFQGSPERLWGPDEPRTNKIVFIGKNLDAE 312
R DI R KG++ V+G D+R VFQ VH I +G +R W + R +++VFIG++LD
Sbjct: 295 ARRGPDILRAKGIIDVKGEDKRLVFQAVHMILEGDFQRPWTDKDKRYSRMVFIGRDLDEA 354
Query: 311 ELEKGFRA 288
EL GF A
Sbjct: 355 ELRAGFEA 362
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563,452,050
Number of Sequences: 1393205
Number of extensions: 12564069
Number of successful extensions: 80613
Number of sequences better than 10.0: 1171
Number of HSP's better than 10.0 without gapping: 35390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57013
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
