Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003346A_C01 KMC003346A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02005 protoporphyrinogen oxidase (EC 1.3.3.4) - Arabidopsi... 152 2e-36
ref|NP_192078.1| protoporphyrinogen oxidase; protein id: At4g016... 152 2e-36
gb|AAK62389.1|AF386944_1 Unknown protein [Arabidopsis thaliana] 152 2e-36
pir||T07116 protoporphyrinogen oxidase (EC 1.3.3.4) IX, chloropl... 148 4e-35
sp|O24163|PPOC_TOBAC PROTOPORPHYRINOGEN OXIDASE, CHLOROPLAST PRE... 145 3e-34
>pir||T02005 protoporphyrinogen oxidase (EC 1.3.3.4) - Arabidopsis thaliana
gi|3859604|gb|AAC72870.1| Arabidopsis thaliana
protoporphyrinogen oxidase precursor (PPO) (SW:P55826)
Length = 545
Score = 152 bits (384), Expect = 2e-36
Identities = 71/94 (75%), Positives = 82/94 (86%)
Frame = -3
Query: 514 VEAVDRDLRKILIKPNAKDPFALAVRTWPQAIPQFLIGHLDLLDAAKASLKSTGFEGLFL 335
VEAVDRDLRK+LIKPN+ DP L VR WPQAIPQFL+GH D+LD AK+SL S+G+EGLFL
Sbjct: 452 VEAVDRDLRKMLIKPNSTDPLKLGVRVWPQAIPQFLVGHFDILDTAKSSLTSSGYEGLFL 511
Query: 334 GGNYVSGVALGRCVEGAYEIAAEVNDFLSQRVYK 233
GGNYV+GVALGRCVEGAYE A EVN+F+S+ YK
Sbjct: 512 GGNYVAGVALGRCVEGAYETAIEVNNFMSRYAYK 545
>ref|NP_192078.1| protoporphyrinogen oxidase; protein id: At4g01690.1, supported by
cDNA: gi_1183006, supported by cDNA: gi_14423413
[Arabidopsis thaliana] gi|2495184|sp|P55826|PPOC_ARATH
Protoporphyrinogen oxidase, chloroplast precursor (PPO)
gi|25407122|pir||G85021 protoporphyrinogen oxidase
[imported] - Arabidopsis thaliana
gi|1877018|dbj|BAA11820.1| protoporphyrinogen oxidase
[Arabidopsis thaliana] gi|7268212|emb|CAB77739.1|
protoporphyrinogen oxidase [Arabidopsis thaliana]
Length = 537
Score = 152 bits (384), Expect = 2e-36
Identities = 71/94 (75%), Positives = 82/94 (86%)
Frame = -3
Query: 514 VEAVDRDLRKILIKPNAKDPFALAVRTWPQAIPQFLIGHLDLLDAAKASLKSTGFEGLFL 335
VEAVDRDLRK+LIKPN+ DP L VR WPQAIPQFL+GH D+LD AK+SL S+G+EGLFL
Sbjct: 444 VEAVDRDLRKMLIKPNSTDPLKLGVRVWPQAIPQFLVGHFDILDTAKSSLTSSGYEGLFL 503
Query: 334 GGNYVSGVALGRCVEGAYEIAAEVNDFLSQRVYK 233
GGNYV+GVALGRCVEGAYE A EVN+F+S+ YK
Sbjct: 504 GGNYVAGVALGRCVEGAYETAIEVNNFMSRYAYK 537
>gb|AAK62389.1|AF386944_1 Unknown protein [Arabidopsis thaliana]
Length = 537
Score = 152 bits (384), Expect = 2e-36
Identities = 71/94 (75%), Positives = 82/94 (86%)
Frame = -3
Query: 514 VEAVDRDLRKILIKPNAKDPFALAVRTWPQAIPQFLIGHLDLLDAAKASLKSTGFEGLFL 335
VEAVDRDLRK+LIKPN+ DP L VR WPQAIPQFL+GH D+LD AK+SL S+G+EGLFL
Sbjct: 444 VEAVDRDLRKMLIKPNSTDPLKLGVRVWPQAIPQFLVGHFDILDTAKSSLTSSGYEGLFL 503
Query: 334 GGNYVSGVALGRCVEGAYEIAAEVNDFLSQRVYK 233
GGNYV+GVALGRCVEGAYE A EVN+F+S+ YK
Sbjct: 504 GGNYVAGVALGRCVEGAYETAIEVNNFMSRYAYK 537
>pir||T07116 protoporphyrinogen oxidase (EC 1.3.3.4) IX, chloroplast - potato
gi|3093410|emb|CAA12400.1| protoporphyrinogen oxidase
[Solanum tuberosum]
Length = 557
Score = 148 bits (373), Expect = 4e-35
Identities = 71/94 (75%), Positives = 77/94 (81%)
Frame = -3
Query: 514 VEAVDRDLRKILIKPNAKDPFALAVRTWPQAIPQFLIGHLDLLDAAKASLKSTGFEGLFL 335
VEAVDRDLRK+LIKP A+DPF VR WPQAIPQFL+GHLD L AK +L G +GLFL
Sbjct: 464 VEAVDRDLRKMLIKPKAQDPFVTGVRVWPQAIPQFLVGHLDTLGTAKTALSDNGLDGLFL 523
Query: 334 GGNYVSGVALGRCVEGAYEIAAEVNDFLSQRVYK 233
GGNYVSGVALGRCVEGAYEIA+EV FLSQ YK
Sbjct: 524 GGNYVSGVALGRCVEGAYEIASEVTGFLSQYAYK 557
>sp|O24163|PPOC_TOBAC PROTOPORPHYRINOGEN OXIDASE, CHLOROPLAST PRECURSOR (PPO I)
(PROTOPORPHYRINOGEN IX OXIDASE ISOZYME I) (PPX I)
gi|7489193|pir||T04058 protoporphyrinogen oxidase (EC
1.3.3.4) IX precursor, chloroplast - common tobacco
gi|2370333|emb|CAA73865.1| protoporphyrinogen oxidase
[Nicotiana tabacum]
Length = 548
Score = 145 bits (366), Expect = 3e-34
Identities = 68/94 (72%), Positives = 77/94 (81%)
Frame = -3
Query: 514 VEAVDRDLRKILIKPNAKDPFALAVRTWPQAIPQFLIGHLDLLDAAKASLKSTGFEGLFL 335
VE VDRDLRK+LIKP A+DP + VR WPQAIPQFL+GHLD L AKA++ G EGLFL
Sbjct: 455 VEVVDRDLRKMLIKPKAQDPLVVGVRVWPQAIPQFLVGHLDTLSTAKAAMNDNGLEGLFL 514
Query: 334 GGNYVSGVALGRCVEGAYEIAAEVNDFLSQRVYK 233
GGNYVSGVALGRCVEGAYE+A+EV FLS+ YK
Sbjct: 515 GGNYVSGVALGRCVEGAYEVASEVTGFLSRYAYK 548
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,079,348
Number of Sequences: 1393205
Number of extensions: 8879650
Number of successful extensions: 32298
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 31642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32274
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
