Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003343A_C01 KMC003343A_c01
(471 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF74563.1|AF208544_1 heat stress transcription factor A3 [Ly... 44 6e-04
ref|NP_520871.1| PROBABLE TRANSKETOLASE PROTEIN [Ralstonia solan... 33 1.1
gb|ZP_00101854.1| hypothetical protein [Desulfitobacterium hafni... 33 1.5
gb|ZP_00024155.1| hypothetical protein [Ralstonia metallidurans] 33 1.5
ref|NP_495701.1| IRE kinase homolog IRE-1 (ire-1) [Caenorhabditi... 32 4.4
>gb|AAF74563.1|AF208544_1 heat stress transcription factor A3 [Lycopersicon peruvianum]
Length = 508
Score = 44.3 bits (103), Expect = 6e-04
Identities = 28/62 (45%), Positives = 36/62 (57%), Gaps = 11/62 (17%)
Frame = -1
Query: 471 ELWGNHMNYGVSEFGVTSGLSESDMWDIG----FGSLGIDQWPVD-------DEIAVQPK 325
ELW + +Y V +FGV+SGLS D+WDI GS G+D+WP D + A QPK
Sbjct: 448 ELWDSLSSY-VPDFGVSSGLS--DLWDIDPLQVAGSSGVDKWPADGSPFGQSESHANQPK 504
Query: 324 ED 319
D
Sbjct: 505 ND 506
>ref|NP_520871.1| PROBABLE TRANSKETOLASE PROTEIN [Ralstonia solanacearum]
gi|17429772|emb|CAD16457.1| PROBABLE TRANSKETOLASE
PROTEIN [Ralstonia solanacearum]
Length = 675
Score = 33.5 bits (75), Expect = 1.1
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = -1
Query: 471 ELWGNHMNYGVSEFGVTS 418
+ WGNH+NYGV EFG+++
Sbjct: 408 DAWGNHVNYGVREFGMSA 425
>gb|ZP_00101854.1| hypothetical protein [Desulfitobacterium hafniense]
Length = 305
Score = 33.1 bits (74), Expect = 1.5
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -1
Query: 465 WGNHMNYGVSEFGVTS 418
WGNH+NYGV EFG+++
Sbjct: 74 WGNHINYGVREFGMSA 89
>gb|ZP_00024155.1| hypothetical protein [Ralstonia metallidurans]
Length = 678
Score = 33.1 bits (74), Expect = 1.5
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -1
Query: 465 WGNHMNYGVSEFGVTS 418
WGNH+NYGV EFG+++
Sbjct: 413 WGNHINYGVREFGMSA 428
>ref|NP_495701.1| IRE kinase homolog IRE-1 (ire-1) [Caenorhabditis elegans]
gi|1353135|sp|Q09499|YQG4_CAEEL Putative
serine/threonine-protein kinase C41C4.4 in chromosome II
precursor gi|7497267|pir||T19874 hypothetical protein
C41C4.4 - Caenorhabditis elegans
gi|3874887|emb|CAA88100.1| C. elegans IRE-1 protein
(corresponding sequence C41C4.4) [Caenorhabditis
elegans]
Length = 983
Score = 31.6 bits (70), Expect = 4.4
Identities = 20/51 (39%), Positives = 24/51 (46%)
Frame = +2
Query: 233 WPLRTINTASTPGATSA*EQMNPYSFLGLSSFG*TAISSSTGH*SIPKLPK 385
WP A+ P TS Q P F+G SSFG AI + H +I PK
Sbjct: 291 WPTVLGVNAADPQTTSLTNQFFPALFVGESSFGLYAIEALVDHQTITYSPK 341
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,954,206
Number of Sequences: 1393205
Number of extensions: 7796587
Number of successful extensions: 16325
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 15912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16310
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
