Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003340A_C01 KMC003340A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC02723.1| adenosine kinase [Oryza sativa] 44 0.002
emb|CAB40376.1| adenosine kinase [Zea mays] 44 0.002
gb|AAO72629.1| adenosine kinase-like protein [Oryza sativa (japo... 44 0.002
ref|NP_173814.1| protein kinase, putative; protein id: At1g24030... 43 0.002
pir||A86374 protein T23E23.18 [imported] - Arabidopsis thaliana ... 43 0.002
>dbj|BAC02723.1| adenosine kinase [Oryza sativa]
Length = 296
Score = 43.5 bits (101), Expect = 0.002
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -3
Query: 429 GAISYMDCIGKDKYGEERKKNFKLAG 352
GA SYM CIGKDK+GEE KKN + AG
Sbjct: 34 GATSYMGCIGKDKFGEEMKKNAQAAG 59
>emb|CAB40376.1| adenosine kinase [Zea mays]
Length = 331
Score = 43.5 bits (101), Expect = 0.002
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -3
Query: 429 GAISYMDCIGKDKYGEERKKNFKLAG 352
GA SYM CIGKDK+GEE KKN + AG
Sbjct: 69 GATSYMGCIGKDKFGEEMKKNAQAAG 94
>gb|AAO72629.1| adenosine kinase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 370
Score = 43.5 bits (101), Expect = 0.002
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -3
Query: 429 GAISYMDCIGKDKYGEERKKNFKLAG 352
GA SYM CIGKDK+GEE KKN + AG
Sbjct: 108 GATSYMGCIGKDKFGEEMKKNAQAAG 133
>ref|NP_173814.1| protein kinase, putative; protein id: At1g24030.1 [Arabidopsis
thaliana]
Length = 303
Score = 43.1 bits (100), Expect = 0.002
Identities = 19/34 (55%), Positives = 27/34 (78%)
Frame = -1
Query: 548 SNVYAFGVVLLELITCRKPIEATRSPREVDFVLQ 447
S++YAFGVVLLEL+T R+ ++ T+ P E + VLQ
Sbjct: 191 SDIYAFGVVLLELLTGRRAVDLTQGPNEQNLVLQ 224
>pir||A86374 protein T23E23.18 [imported] - Arabidopsis thaliana
gi|9369396|gb|AAF87144.1|AC002423_9 T23E23.18
[Arabidopsis thaliana]
Length = 307
Score = 43.1 bits (100), Expect = 0.002
Identities = 19/34 (55%), Positives = 27/34 (78%)
Frame = -1
Query: 548 SNVYAFGVVLLELITCRKPIEATRSPREVDFVLQ 447
S++YAFGVVLLEL+T R+ ++ T+ P E + VLQ
Sbjct: 195 SDIYAFGVVLLELLTGRRAVDLTQGPNEQNLVLQ 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,840,491
Number of Sequences: 1393205
Number of extensions: 9607631
Number of successful extensions: 21558
Number of sequences better than 10.0: 555
Number of HSP's better than 10.0 without gapping: 21080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21550
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
