Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003338A_C01 KMC003338A_c01
(417 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_032496.1| keratin complex 1, acidic, gene 16 [Mus musculu... 32 2.4
ref|XP_242173.1| hypothetical protein XP_242173 [Rattus norvegicus] 32 2.4
gb|AAG38012.1|AF264006_1 keratin intermediate filament 16a [Mus ... 32 2.4
gb|AAG38013.1|AF264006_2 keratin intermediate filament 16b [Mus ... 32 2.4
gb|AAA59460.1| keratin type 16 31 4.1
>ref|NP_032496.1| keratin complex 1, acidic, gene 16 [Mus musculus]
gi|23396632|sp|Q9Z2K1|K1CP_MOUSE Keratin, type I
cytoskeletal 16 (Cytokeratin 16) (K16) (CK 16)
gi|3925355|gb|AAC79424.1| keratin 16 [Mus musculus]
Length = 469
Score = 31.6 bits (70), Expect = 2.4
Identities = 18/53 (33%), Positives = 28/53 (51%)
Frame = +2
Query: 152 RCSKSNSIEHTRHYG*YCLQQPLS*RIISNHHAHTCECRISMQDQSQELELLV 310
+ S NS+E T+ G YC+Q +IS+ + R M+ QSQE +L+
Sbjct: 350 KASLENSLEETK--GRYCMQLSQIQGLISSVEEQLAQLRCEMEQQSQEYNILL 400
>ref|XP_242173.1| hypothetical protein XP_242173 [Rattus norvegicus]
Length = 491
Score = 31.6 bits (70), Expect = 2.4
Identities = 14/61 (22%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Frame = -3
Query: 205 AILTVMSCMLYAIRFRATMTVEVVNIFLVY---LNCIVAAIFCSVNSDLLYLWCTKIVVY 35
++ +V+S +Y++ + +V +++ V + +V+A CS+ S +Y+WC +
Sbjct: 258 SVYSVVSASVYSVVSASVCSVVSASVYSVVSASVYSVVSASVCSLVSASVYMWCQPLFAV 317
Query: 34 W 32
W
Sbjct: 318 W 318
>gb|AAG38012.1|AF264006_1 keratin intermediate filament 16a [Mus musculus]
Length = 474
Score = 31.6 bits (70), Expect = 2.4
Identities = 18/53 (33%), Positives = 28/53 (51%)
Frame = +2
Query: 152 RCSKSNSIEHTRHYG*YCLQQPLS*RIISNHHAHTCECRISMQDQSQELELLV 310
+ S NS+E T+ G YC+Q +IS+ + R M+ QSQE +L+
Sbjct: 350 KASLENSLEETK--GRYCMQLSQIQGLISSVEEQLAQLRCEMEQQSQEYNILL 400
>gb|AAG38013.1|AF264006_2 keratin intermediate filament 16b [Mus musculus]
Length = 473
Score = 31.6 bits (70), Expect = 2.4
Identities = 18/53 (33%), Positives = 28/53 (51%)
Frame = +2
Query: 152 RCSKSNSIEHTRHYG*YCLQQPLS*RIISNHHAHTCECRISMQDQSQELELLV 310
+ S NS+E T+ G YC+Q +IS+ + R M+ QSQE +L+
Sbjct: 350 KASLENSLEETK--GRYCMQLSQIQGLISSVEEQLAQLRCEMEQQSQEYNILL 400
>gb|AAA59460.1| keratin type 16
Length = 470
Score = 30.8 bits (68), Expect = 4.1
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 152 RCSKSNSIEHTRHYG*YCLQQPLS*RIISNHHAHTCECRISMQDQSQELELLV 310
+ S NS+E T+ G YC+Q +I + + R M+ QSQE ++L+
Sbjct: 352 KASLENSLEETK--GRYCMQLSQIQGLIGSVEEQLAQLRCEMEQQSQEYQILL 402
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 330,093,906
Number of Sequences: 1393205
Number of extensions: 6623077
Number of successful extensions: 14700
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 14397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14680
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
