Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003337A_C01 KMC003337A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D96504 protein F9C16.25 [imported] - Arabidopsis thaliana g... 35 0.46
ref|NP_174213.1| CHP-rich zinc finger protein, putative; protein... 35 0.46
pir||C96504 protein F9C16.23 [imported] - Arabidopsis thaliana g... 35 0.46
ref|NP_192163.1| CHP-rich zinc finger protein, putative; protein... 35 0.46
ref|NP_704294.1| ubiquitin-protein ligase 1, putative [Plasmodiu... 35 0.46
>pir||D96504 protein F9C16.25 [imported] - Arabidopsis thaliana
gi|8778670|gb|AAF79678.1|AC022314_19 F9C16.25
[Arabidopsis thaliana]
Length = 772
Score = 35.4 bits (80), Expect = 0.46
Identities = 12/41 (29%), Positives = 23/41 (55%)
Frame = -3
Query: 527 C*FLLCIG*HFIPRMTSFNHSQNLYAQNYQQFNNTFSYWCK 405
C F LC G +P+ + H +++ +Y + +T +YWC+
Sbjct: 695 CEFALCFGCATLPQKVRYKHDKHILTLSYGKETSTMTYWCE 735
>ref|NP_174213.1| CHP-rich zinc finger protein, putative; protein id: At1g29180.1
[Arabidopsis thaliana]
Length = 444
Score = 35.4 bits (80), Expect = 0.46
Identities = 13/41 (31%), Positives = 22/41 (52%)
Frame = -3
Query: 527 C*FLLCIG*HFIPRMTSFNHSQNLYAQNYQQFNNTFSYWCK 405
C F LC G +P+ + H ++ +Y + NT +YWC+
Sbjct: 313 CDFALCFGCATLPQNVRYKHDDHILTLSYGKETNTETYWCE 353
>pir||C96504 protein F9C16.23 [imported] - Arabidopsis thaliana
gi|8778671|gb|AAF79679.1|AC022314_20 F9C16.23
[Arabidopsis thaliana]
Length = 859
Score = 35.4 bits (80), Expect = 0.46
Identities = 12/41 (29%), Positives = 23/41 (55%)
Frame = -3
Query: 527 C*FLLCIG*HFIPRMTSFNHSQNLYAQNYQQFNNTFSYWCK 405
C F LC G +P+ + H +++ +Y + +T +YWC+
Sbjct: 728 CEFALCFGCATLPQKVRYKHDKHILTLSYGKETSTMTYWCE 768
>ref|NP_192163.1| CHP-rich zinc finger protein, putative; protein id: At4g02540.1
[Arabidopsis thaliana] gi|7486852|pir||T01095
hypothetical protein T10P11.16.1 - Arabidopsis thaliana
gi|3892060|gb|AAC78273.1|AAC78273 hypothetical protein
[Arabidopsis thaliana] gi|7269014|emb|CAB80747.1|
putative protein [Arabidopsis thaliana]
Length = 822
Score = 35.4 bits (80), Expect = 0.46
Identities = 13/41 (31%), Positives = 22/41 (52%)
Frame = -3
Query: 527 C*FLLCIG*HFIPRMTSFNHSQNLYAQNYQQFNNTFSYWCK 405
C F LC G IP + H +++ +Y + +T +YWC+
Sbjct: 690 CNFSLCFGCATIPHKARYKHDKHMLTISYGEKTSTMTYWCE 730
>ref|NP_704294.1| ubiquitin-protein ligase 1, putative [Plasmodium falciparum 3D7]
gi|23499033|emb|CAD51113.1| ubiquitin-protein ligase 1,
putative [Plasmodium falciparum 3D7]
Length = 8591
Score = 35.4 bits (80), Expect = 0.46
Identities = 25/79 (31%), Positives = 38/79 (47%)
Frame = -1
Query: 262 IFLSHSFYF*HLPKNLHFDCFYFLFELGVRSVVSHIPFSLQRNCNCCRFQLGLILVS*LR 83
IFL YF K +HF+ +F+L + S+ SH+ + + + LGL L S
Sbjct: 416 IFLEELLYFLKYHKYVHFNTLRIIFDLLITSIESHLYYKVVSDI------LGLRLHS--- 466
Query: 82 KGIFFCIIYIYIFLFLSNF 26
G+F I Y+ FLS +
Sbjct: 467 -GLFISIFKYYLNYFLSPY 484
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,937,197
Number of Sequences: 1393205
Number of extensions: 9054500
Number of successful extensions: 21828
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 20556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21567
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
