Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003336A_C01 KMC003336A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192629.1| arginase; protein id: At4g08900.1, supported by... 193 1e-48
gb|AAK07744.1|AF130440_1 arginase [Pinus taeda] 186 1e-46
gb|AAK15006.1| arginase [Brassica napus] 182 2e-45
ref|NP_192626.1| putative arginase; protein id: At4g08870.1, sup... 181 7e-45
gb|AAM64858.1| putative arginase [Arabidopsis thaliana] 178 5e-44
>ref|NP_192629.1| arginase; protein id: At4g08900.1, supported by cDNA: gi_15450350,
supported by cDNA: gi_16974474, supported by cDNA:
gi_602421 [Arabidopsis thaliana]
gi|1168493|sp|P46637|ARG1_ARATH Arginase
gi|25407461|pir||F85089 arginase [imported] -
Arabidopsis thaliana gi|602422|gb|AAA85816.1| arginase
gi|4325373|gb|AAD17369.1| Arabidopsis thaliana arginase
(SW:P46637) (Pfam: PF00491, Score=419.6, E=3.7e-142 N=1)
gi|7267532|emb|CAB78014.1| arginase [Arabidopsis
thaliana] gi|15450351|gb|AAK96469.1| AT4g08900/T3H13_7
[Arabidopsis thaliana] gi|16974475|gb|AAL31241.1|
AT4g08900/T3H13_7 [Arabidopsis thaliana]
Length = 342
Score = 193 bits (491), Expect = 1e-48
Identities = 96/104 (92%), Positives = 98/104 (93%)
Frame = -2
Query: 561 EQYEMRTFSRDRHFLENLKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSFRDVLNI 382
EQYEMRTFS+DR LENLKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSFRDVLNI
Sbjct: 239 EQYEMRTFSKDRPMLENLKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSFRDVLNI 298
Query: 381 LHNLQGDVVAGDVVEFNPQRDTVDGMTAMVAAKLVREMTAKISK 250
LHNLQ DVV DVVEFNPQRDTVDGMTAMVAAKLVRE+ AKISK
Sbjct: 299 LHNLQADVVGADVVEFNPQRDTVDGMTAMVAAKLVRELAAKISK 342
>gb|AAK07744.1|AF130440_1 arginase [Pinus taeda]
Length = 341
Score = 186 bits (473), Expect = 1e-46
Identities = 89/104 (85%), Positives = 99/104 (94%)
Frame = -2
Query: 561 EQYEMRTFSRDRHFLENLKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSFRDVLNI 382
EQYEM +FS+DR FLENLKLGEGVKGVYISIDVDCLDPAFAPGVSH+EPGGLSFR V+N+
Sbjct: 235 EQYEMHSFSKDRDFLENLKLGEGVKGVYISIDVDCLDPAFAPGVSHLEPGGLSFRGVMNL 294
Query: 381 LHNLQGDVVAGDVVEFNPQRDTVDGMTAMVAAKLVREMTAKISK 250
+ NLQGD+VA DVVEFNPQRDTVDGMTAMVAAKLVRE+T+K+SK
Sbjct: 295 VQNLQGDIVAADVVEFNPQRDTVDGMTAMVAAKLVRELTSKMSK 338
>gb|AAK15006.1| arginase [Brassica napus]
Length = 334
Score = 182 bits (462), Expect = 2e-45
Identities = 90/96 (93%), Positives = 91/96 (94%)
Frame = -2
Query: 561 EQYEMRTFSRDRHFLENLKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSFRDVLNI 382
EQYEMRTFS+DR LENLKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSFRDVLNI
Sbjct: 239 EQYEMRTFSKDRPMLENLKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSFRDVLNI 298
Query: 381 LHNLQGDVVAGDVVEFNPQRDTVDGMTAMVAAKLVR 274
LHNLQ DVV DVVEFNPQRDTVDGMTAMVAAKLVR
Sbjct: 299 LHNLQADVVGADVVEFNPQRDTVDGMTAMVAAKLVR 334
>ref|NP_192626.1| putative arginase; protein id: At4g08870.1, supported by cDNA:
33985. [Arabidopsis thaliana]
gi|11131457|sp|Q9ZPF5|ARG2_ARATH Probable arginase
gi|25407458|pir||C85089 probable arginase [imported] -
Arabidopsis thaliana gi|4325375|gb|AAD17371.1| similar
to arginases (Pfam: PF00491, Score=353.2, E=1.4e-119,
N=1) [Arabidopsis thaliana] gi|7267529|emb|CAB78011.1|
putative arginase [Arabidopsis thaliana]
gi|28392862|gb|AAO41868.1| unknown protein [Arabidopsis
thaliana]
Length = 344
Score = 181 bits (458), Expect = 7e-45
Identities = 88/104 (84%), Positives = 93/104 (88%)
Frame = -2
Query: 561 EQYEMRTFSRDRHFLENLKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSFRDVLNI 382
EQYEMRTFS+DR LENLKLGEGVKGVYISIDVDCLDP FA GVSH EPGGLSFRDVLNI
Sbjct: 241 EQYEMRTFSKDRQMLENLKLGEGVKGVYISIDVDCLDPGFAHGVSHFEPGGLSFRDVLNI 300
Query: 381 LHNLQGDVVAGDVVEFNPQRDTVDGMTAMVAAKLVREMTAKISK 250
LHNLQGD+V DVVE+NPQRDT D MTAMVAAK VRE+ AK+SK
Sbjct: 301 LHNLQGDLVGADVVEYNPQRDTADDMTAMVAAKFVRELAAKMSK 344
>gb|AAM64858.1| putative arginase [Arabidopsis thaliana]
Length = 344
Score = 178 bits (451), Expect = 5e-44
Identities = 87/104 (83%), Positives = 92/104 (87%)
Frame = -2
Query: 561 EQYEMRTFSRDRHFLENLKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSFRDVLNI 382
EQYEMRTFS+DR LENLKLGEGVKGVYISIDVDCLDP FA GVSH EPGGLSFRDVLNI
Sbjct: 241 EQYEMRTFSKDRQMLENLKLGEGVKGVYISIDVDCLDPGFAHGVSHFEPGGLSFRDVLNI 300
Query: 381 LHNLQGDVVAGDVVEFNPQRDTVDGMTAMVAAKLVREMTAKISK 250
LHNLQGD+V DVV +NPQRDT D MTAMVAAK VRE+ AK+SK
Sbjct: 301 LHNLQGDLVGADVVGYNPQRDTADDMTAMVAAKFVRELAAKMSK 344
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,818,232
Number of Sequences: 1393205
Number of extensions: 11012809
Number of successful extensions: 25593
Number of sequences better than 10.0: 216
Number of HSP's better than 10.0 without gapping: 24383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25550
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
