Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003335A_C01 KMC003335A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC23035.1| 26S proteasome AAA-ATPase subunit RPT4a [Solanum... 352 2e-96
ref|NP_199115.1| 26S proteasome AAA-ATPase subunit RPT4a; protei... 345 2e-94
ref|NP_175120.1| 26S proteasome regulatory particle triple-A ATP... 344 4e-94
dbj|BAB17625.1| 26S proteasome regulatory particle triple-A ATPa... 326 1e-88
dbj|BAB78495.1| 26S proteasome regulatory particle triple-A ATPa... 296 2e-79
>dbj|BAC23035.1| 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum]
Length = 398
Score = 352 bits (904), Expect = 2e-96
Identities = 178/185 (96%), Positives = 184/185 (99%)
Frame = +3
Query: 42 EDAVRRRTAVADYRKKLLQHKELESRVRSVRENLRASKKEYNKTEDDLKSLQSVGQIIGE 221
EDAVRRRTA+ADYRKKLLQHKEL++RVR+VRENLRA+KKEY KTEDDLKSLQSVGQIIGE
Sbjct: 5 EDAVRRRTALADYRKKLLQHKELDARVRTVRENLRATKKEYAKTEDDLKSLQSVGQIIGE 64
Query: 222 VLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVV 401
VLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVV
Sbjct: 65 VLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVV 124
Query: 402 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTG 581
YNMLHEDPGN+SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTG
Sbjct: 125 YNMLHEDPGNISYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTG 184
Query: 582 KTLLA 596
KTLLA
Sbjct: 185 KTLLA 189
>ref|NP_199115.1| 26S proteasome AAA-ATPase subunit RPT4a; protein id: At5g43010.1,
supported by cDNA: gi_13937182, supported by cDNA:
gi_18700261, supported by cDNA: gi_6652883 [Arabidopsis
thaliana] gi|6652884|gb|AAF22524.1|AF123393_1 26S
proteasome AAA-ATPase subunit RPT4a [Arabidopsis
thaliana] gi|9758590|dbj|BAB09203.1| 26S proteasome
AAA-ATPase subunit RPT4a [Arabidopsis thaliana]
gi|13937183|gb|AAK50085.1|AF372945_1 AT5g43010/MBD2_21
[Arabidopsis thaliana] gi|18700262|gb|AAL77741.1|
AT5g43010/MBD2_21 [Arabidopsis thaliana]
Length = 399
Score = 345 bits (886), Expect = 2e-94
Identities = 174/190 (91%), Positives = 180/190 (94%)
Frame = +3
Query: 27 MTDASEDAVRRRTAVADYRKKLLQHKELESRVRSVRENLRASKKEYNKTEDDLKSLQSVG 206
MTD E RR AV++YRKKLLQHKELESRVR+ RENLR +KKE+NKTEDDLKSLQSVG
Sbjct: 1 MTDVDESVRRRTAAVSEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSVG 60
Query: 207 QIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPRE 386
QIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPRE
Sbjct: 61 QIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPRE 120
Query: 387 VDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYG 566
VDPVVYNMLHEDPGN+SYSAVGGL DQIRELRESIELPLMNPELFLRVGIKPPKGVLLYG
Sbjct: 121 VDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYG 180
Query: 567 PPGTGKTLLA 596
PPGTGKTLLA
Sbjct: 181 PPGTGKTLLA 190
>ref|NP_175120.1| 26S proteasome regulatory particle triple-A ATPase subunit4,
putative; protein id: At1g45000.1, supported by cDNA:
gi_17065265 [Arabidopsis thaliana]
gi|7767657|gb|AAF69154.1|AC007915_6 F27F5.8 [Arabidopsis
thaliana] gi|17065266|gb|AAL32787.1| similar to 26S
proteasome AAA-ATPase subunit RPT4a [Arabidopsis
thaliana] gi|21387177|gb|AAM47992.1| 26S proteasome
AAA-ATPase subunit RPT4a-like protein [Arabidopsis
thaliana]
Length = 399
Score = 344 bits (883), Expect = 4e-94
Identities = 174/190 (91%), Positives = 180/190 (94%)
Frame = +3
Query: 27 MTDASEDAVRRRTAVADYRKKLLQHKELESRVRSVRENLRASKKEYNKTEDDLKSLQSVG 206
M+D + A RR AV DYRKKLL HKELESRVR+ RENLRA+KKE+NKTEDDLKSLQSVG
Sbjct: 1 MSDGDDAARRRTAAVTDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSVG 60
Query: 207 QIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPRE 386
QIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPRE
Sbjct: 61 QIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPRE 120
Query: 387 VDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYG 566
VDPVVYNMLHEDPGN+SYSAVGGL DQIRELRESIELPLMNPELFLRVGIKPPKGVLLYG
Sbjct: 121 VDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYG 180
Query: 567 PPGTGKTLLA 596
PPGTGKTLLA
Sbjct: 181 PPGTGKTLLA 190
>dbj|BAB17625.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
sativa (japonica cultivar-group)]
Length = 400
Score = 326 bits (836), Expect = 1e-88
Identities = 165/183 (90%), Positives = 173/183 (94%)
Frame = +3
Query: 48 AVRRRTAVADYRKKLLQHKELESRVRSVRENLRASKKEYNKTEDDLKSLQSVGQIIGEVL 227
A RRR +V +YRKKLL +ELESRV +VRENL+ +KK++ KTEDDLKSLQSVGQIIGEVL
Sbjct: 9 AARRRASVTEYRKKLLNCRELESRVSTVRENLKNAKKDFTKTEDDLKSLQSVGQIIGEVL 68
Query: 228 RPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYN 407
RPLDNER IVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMR LPREVDPVVYN
Sbjct: 69 RPLDNERFIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRTLPREVDPVVYN 128
Query: 408 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 587
MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT
Sbjct: 129 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 188
Query: 588 LLA 596
LLA
Sbjct: 189 LLA 191
>dbj|BAB78495.1| 26S proteasome regulatory particle triple-A ATPase subunit4b [Oryza
sativa (japonica cultivar-group)]
Length = 377
Score = 296 bits (757), Expect = 2e-79
Identities = 147/165 (89%), Positives = 158/165 (95%)
Frame = +3
Query: 102 KELESRVRSVRENLRASKKEYNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRY 281
+ELE+R R+ R+NL+ +KK++ KTEDDLKSLQSVGQIIGEVLRPLD+ER IVKASSGPRY
Sbjct: 4 RELEARARTARDNLKNAKKDFGKTEDDLKSLQSVGQIIGEVLRPLDSERFIVKASSGPRY 63
Query: 282 VVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLS 461
VVGCRSKVDKEKL +GTRVVLDMTTLTIMR LPREVDPVVYNMLHEDPGNVSYSAVGGLS
Sbjct: 64 VVGCRSKVDKEKLIAGTRVVLDMTTLTIMRTLPREVDPVVYNMLHEDPGNVSYSAVGGLS 123
Query: 462 DQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 596
DQIRELRESIELPLMNP+LFLRVGIKPPKGVLLYGPPGTGKTLLA
Sbjct: 124 DQIRELRESIELPLMNPKLFLRVGIKPPKGVLLYGPPGTGKTLLA 168
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,834,811
Number of Sequences: 1393205
Number of extensions: 10912932
Number of successful extensions: 44237
Number of sequences better than 10.0: 1172
Number of HSP's better than 10.0 without gapping: 41804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44019
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
