Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003334A_C01 KMC003334A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175446.2| hypothetical protein; protein id: At1g50280.1, ... 33 2.5
dbj|BAB01299.1| gb|AAD50054.1~gene_id:MPN9.9~strong similarity t... 32 3.3
ref|NP_735320.1| Unknown [Streptococcus agalactiae NEM316] gi|23... 32 4.3
ref|NP_687867.1| pullulanase, putative [Streptococcus agalactiae... 32 4.3
gb|ZP_00077582.1| hypothetical protein [Methanosarcina barkeri] 32 4.3
>ref|NP_175446.2| hypothetical protein; protein id: At1g50280.1, supported by cDNA:
gi_19310600 [Arabidopsis thaliana]
gi|19310601|gb|AAL85031.1| unknown protein [Arabidopsis
thaliana] gi|27754740|gb|AAO22813.1| unknown protein
[Arabidopsis thaliana]
Length = 525
Score = 32.7 bits (73), Expect = 2.5
Identities = 19/58 (32%), Positives = 29/58 (49%)
Frame = +3
Query: 216 VNIKCEYEFFLHSIWSNQFIGRQHNLIKVSSSKRKKKKNLAYIWQWRDGTRGDDFGGG 389
+N+ +Y FFL+ +++ G +IK S KR KKK + I +DF GG
Sbjct: 9 INLNGQYTFFLNQNVISKYSGSLRKMIKQSKKKRNKKKRIITI-------EINDFPGG 59
>dbj|BAB01299.1| gb|AAD50054.1~gene_id:MPN9.9~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 554
Score = 32.3 bits (72), Expect = 3.3
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Frame = +3
Query: 216 VNIKCEYEFFLHSIWSNQFIGRQHNLIKVSSSKRKKKKNLAYIWQWRDGTRGDD------ 377
+N+ ++ FF++ +++ G +IK S+ K+K KN I + D G D
Sbjct: 9 INLNNQFTFFVNQDLISEYSGFLRKMIKQSNKKKKNHKNSRIIIEVEDFPGGSDGFDLVL 68
Query: 378 ---FGGGLGSSSGKIAM 419
+GGG+ +++
Sbjct: 69 RFCYGGGISIDVSNVSI 85
>ref|NP_735320.1| Unknown [Streptococcus agalactiae NEM316]
gi|23095304|emb|CAD46514.1| Unknown [Streptococcus
agalactiae NEM316]
Length = 766
Score = 32.0 bits (71), Expect = 4.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 288 NLIKVSSSKRKKKKNLAYIWQWRDGTRGDDFGGGLGSSSGKIAM 419
N + V RKK +WQWRDG+ G D S G +A+
Sbjct: 3 NTVIVHYHSRKKNYFNLSLWQWRDGSEGQDAHFSRFDSFGAVAI 46
>ref|NP_687867.1| pullulanase, putative [Streptococcus agalactiae 2603V/R]
gi|22533872|gb|AAM99739.1|AE014230_19 pullulanase,
putative [Streptococcus agalactiae 2603V/R]
Length = 766
Score = 32.0 bits (71), Expect = 4.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 288 NLIKVSSSKRKKKKNLAYIWQWRDGTRGDDFGGGLGSSSGKIAM 419
N + V RKK +WQWRDG+ G D S G +A+
Sbjct: 3 NTVIVHYHSRKKNYFNLSLWQWRDGSEGQDAHFSRFDSFGAVAI 46
>gb|ZP_00077582.1| hypothetical protein [Methanosarcina barkeri]
Length = 434
Score = 32.0 bits (71), Expect = 4.3
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = -1
Query: 483 LSPLNLICHHPHHFPSAPSLFSLLSYRCC 397
L PL++IC H + F +AP L S + CC
Sbjct: 10 LEPLSMICGHHNFFQNAPDLISRDIFPCC 38
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,341,571
Number of Sequences: 1393205
Number of extensions: 9609315
Number of successful extensions: 25077
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24996
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
