Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003331A_C01 KMC003331A_c01
(493 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL08263.1| At1g32359/F27G20.10 [Arabidopsis thaliana] gi|195... 63 2e-09
ref|NP_564396.1| putative MYB family transcription factor; prote... 63 2e-09
ref|NP_566631.1| expressed protein; protein id: At3g19360.1, sup... 36 0.20
dbj|BAB64701.1| P0431G06.12 [Oryza sativa (japonica cultivar-gro... 34 1.00
ref|NP_655870.1| MMR_HSR1, GTPase of unknown function [Bacillus ... 33 1.7
>gb|AAL08263.1| At1g32359/F27G20.10 [Arabidopsis thaliana]
gi|19547999|gb|AAL87363.1| At1g32359/F27G20.10
[Arabidopsis thaliana]
Length = 384
Score = 62.8 bits (151), Expect = 2e-09
Identities = 31/44 (70%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Frame = -2
Query: 447 YHIGVPSPRPS-LVLQRPGPRTLQKWKGPDKIRRIYGDWIDDIE 319
YH GV R S V Q+PG RT QKWKGP KI RIYGDWIDDIE
Sbjct: 341 YHTGVALQRASSAVTQKPGIRTHQKWKGPAKISRIYGDWIDDIE 384
>ref|NP_564396.1| putative MYB family transcription factor; protein id: At1g32360.1,
supported by cDNA: gi_15912258 [Arabidopsis thaliana]
gi|25513554|pir||D86448 F5D14.12 protein - Arabidopsis
thaliana gi|8920610|gb|AAF81332.1|AC007767_12 Contains
similarity to an unknown protein At2g35430 gi|3608145
from Arabidopsis thaliana BAC T32F12 gb|AC005314. It
contains a zinc finger C-x8-C-x5-C-x3-H type domain
PF|00642. ESTs gb|AV557765 and gb|AV544407 come from
this gene gi|12597862|gb|AAG60171.1|AC084110_4 unknown
protein [Arabidopsis thaliana]
gi|26451083|dbj|BAC42646.1| putative RING-H2 zinc finger
protein ATL6 [Arabidopsis thaliana]
Length = 384
Score = 62.8 bits (151), Expect = 2e-09
Identities = 31/44 (70%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Frame = -2
Query: 447 YHIGVPSPRPS-LVLQRPGPRTLQKWKGPDKIRRIYGDWIDDIE 319
YH GV R S V Q+PG RT QKWKGP KI RIYGDWIDDIE
Sbjct: 341 YHTGVALQRASSAVTQKPGIRTHQKWKGPAKISRIYGDWIDDIE 384
>ref|NP_566631.1| expressed protein; protein id: At3g19360.1, supported by cDNA:
gi_14335093, supported by cDNA: gi_19548068 [Arabidopsis
thaliana] gi|11994458|dbj|BAB02460.1|
gb|AAC36178.1~gene_id:MLD14.9~similar to unknown protein
[Arabidopsis thaliana] gi|14335094|gb|AAK59826.1|
AT3g19360/MLD14_8 [Arabidopsis thaliana]
gi|19548069|gb|AAL87398.1| AT3g19360/MLD14_8
[Arabidopsis thaliana]
Length = 386
Score = 36.2 bits (82), Expect = 0.20
Identities = 14/23 (60%), Positives = 16/23 (68%)
Frame = -2
Query: 390 RTLQKWKGPDKIRRIYGDWIDDI 322
+ L KW KI RIYGDWIDD+
Sbjct: 352 KCLLKWSDSKKINRIYGDWIDDL 374
>dbj|BAB64701.1| P0431G06.12 [Oryza sativa (japonica cultivar-group)]
Length = 248
Score = 33.9 bits (76), Expect = 1.00
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 114 KR*TLPPNIKAQIRYIPELNKVLLGLEDKNHK-TLPKDGNRNPGIFGSMVIHQ 269
K+ ++P + ++YIPEL K + LE K + T N PG+ GS ++ +
Sbjct: 102 KKLSIPTTVSRVLKYIPELQKQVENLERKKKELTTTSTTNCKPGVLGSQLMSE 154
>ref|NP_655870.1| MMR_HSR1, GTPase of unknown function [Bacillus anthracis A2012]
Length = 349
Score = 33.1 bits (74), Expect = 1.7
Identities = 15/41 (36%), Positives = 23/41 (55%)
Frame = -2
Query: 459 HSDIYHIGVPSPRPSLVLQRPGPRTLQKWKGPDKIRRIYGD 337
H +++ + P SLV+ PG R LQ W+G D I+ + D
Sbjct: 237 HRELFRL----PSGSLVIDTPGMRELQLWEGSDAIQTTFSD 273
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,746,046
Number of Sequences: 1393205
Number of extensions: 9684433
Number of successful extensions: 28502
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 27783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28499
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
