Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003328A_C01 KMC003328A_c01
(717 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182281.1| photolyase/blue-light receptor (PHR2); protein ... 158 8e-38
gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis ... 157 2e-37
ref|ZP_00117704.1| hypothetical protein [Cytophaga hutchinsonii] 82 7e-15
pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis ... 81 2e-14
ref|NP_441086.1| DNA photolyase [Synechocystis sp. PCC 6803] gi|... 81 2e-14
>ref|NP_182281.1| photolyase/blue-light receptor (PHR2); protein id: At2g47590.1,
supported by cDNA: 34800., supported by cDNA: gi_3319287
[Arabidopsis thaliana] gi|7484906|pir||T00425
photolyase/blue-light receptor (PHR2) [imported] -
Arabidopsis thaliana gi|2529668|gb|AAC62851.1|
photolyase/blue-light receptor (PHR2) [Arabidopsis
thaliana] gi|3319288|gb|AAC26199.1| photolyase/blue
light photoreceptor PHR2 [Arabidopsis thaliana]
Length = 447
Score = 158 bits (399), Expect = 8e-38
Identities = 77/117 (65%), Positives = 91/117 (76%)
Frame = -3
Query: 715 LKRFAAELEAQPHKGSKNGTQDSIYGANFSCKISPWLAMGCLSPRTMFDELKKTTSRAIS 536
LK FAA+ +A+ KG++ G +S++GANFSCKISPWLAMG +SPR+MFDELKKT IS
Sbjct: 335 LKSFAADCQARLSKGNQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKT----IS 390
Query: 535 ASSNGKAGGGGSSNTGTNWLMFELLWRDFFRFITKKYSSAKKQLEAAPVTACTGALA 365
AS+ G +TG NWLM+ELLWRDFFRFITKKYSSAK Q+EA P TACTGA A
Sbjct: 391 ASTTSTTPRNGPGDTGLNWLMYELLWRDFFRFITKKYSSAKTQVEAGPATACTGAFA 447
>gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis thaliana]
Length = 447
Score = 157 bits (396), Expect = 2e-37
Identities = 76/117 (64%), Positives = 90/117 (75%)
Frame = -3
Query: 715 LKRFAAELEAQPHKGSKNGTQDSIYGANFSCKISPWLAMGCLSPRTMFDELKKTTSRAIS 536
LK FAA+ + + KG++ G +S++GANFSCKISPWLAMG +SPR+MFDELKKT IS
Sbjct: 335 LKSFAADCQXRXSKGNQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKT----IS 390
Query: 535 ASSNGKAGGGGSSNTGTNWLMFELLWRDFFRFITKKYSSAKKQLEAAPVTACTGALA 365
AS+ G +TG NWLM+ELLWRDFFRFITKKYSSAK Q+EA P TACTGA A
Sbjct: 391 ASTTSTTPRNGPGDTGLNWLMYELLWRDFFRFITKKYSSAKTQVEAGPATACTGAFA 447
>ref|ZP_00117704.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 434
Score = 82.0 bits (201), Expect = 7e-15
Identities = 39/78 (50%), Positives = 52/78 (66%)
Frame = -3
Query: 658 TQDSIYGANFSCKISPWLAMGCLSPRTMFDELKKTTSRAISASSNGKAGGGGSSNTGTNW 479
T+D + G+++S K SPWLA+GCLSPR ++ ELKK SR S+N T W
Sbjct: 234 TRDGMIGSDYSTKFSPWLALGCLSPREIYTELKKYESRF-------------SANESTYW 280
Query: 478 LMFELLWRDFFRFITKKY 425
L+FELLWRD+FRF+ KK+
Sbjct: 281 LIFELLWRDYFRFMMKKH 298
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome gi|28374086|pdb|1NP7|B Chain B, Crystal
Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
Length = 489
Score = 80.9 bits (198), Expect = 2e-14
Identities = 36/80 (45%), Positives = 52/80 (65%)
Frame = -3
Query: 658 TQDSIYGANFSCKISPWLAMGCLSPRTMFDELKKTTSRAISASSNGKAGGGGSSNTGTNW 479
T++ + GA++S K SPWLA+GCLSPR ++ E+K+ + SN T+W
Sbjct: 239 TRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERV-------------SNDSTHW 285
Query: 478 LMFELLWRDFFRFITKKYSS 419
L+FELLWRDFFRF+ +KY +
Sbjct: 286 LIFELLWRDFFRFVAQKYGN 305
>ref|NP_441086.1| DNA photolyase [Synechocystis sp. PCC 6803] gi|7436794|pir||S74805
DNA photolyase - Synechocystis sp. (strain PCC 6803)
gi|1652848|dbj|BAA17766.1| DNA photolyase [Synechocystis
sp. PCC 6803]
Length = 453
Score = 80.9 bits (198), Expect = 2e-14
Identities = 36/80 (45%), Positives = 52/80 (65%)
Frame = -3
Query: 658 TQDSIYGANFSCKISPWLAMGCLSPRTMFDELKKTTSRAISASSNGKAGGGGSSNTGTNW 479
T++ + GA++S K SPWLA+GCLSPR ++ E+K+ + SN T+W
Sbjct: 203 TRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERV-------------SNDSTHW 249
Query: 478 LMFELLWRDFFRFITKKYSS 419
L+FELLWRDFFRF+ +KY +
Sbjct: 250 LIFELLWRDFFRFVAQKYGN 269
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 661,457,299
Number of Sequences: 1393205
Number of extensions: 15199046
Number of successful extensions: 49232
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 45446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48899
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
