Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003326A_C01 KMC003326A_c01
(415 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_703940.1| ethanolaminephosphotransferase, putative [Plasm... 32 1.4
ref|NP_508458.1| Putative small GTPase activator with TBC domain... 31 3.2
gb|AAF81799.1| NADH dehydrogenase [Comolia coriacea] 31 3.2
ref|NP_217864.1| PPE [Mycobacterium tuberculosis H37Rv] gi|74787... 31 4.1
ref|NP_702502.1| hypothetical protein [Plasmodium falciparum 3D7... 30 7.1
>ref|NP_703940.1| ethanolaminephosphotransferase, putative [Plasmodium falciparum
3D7] gi|23498601|emb|CAD50553.1|
ethanolaminephosphotransferase, putative [Plasmodium
falciparum 3D7]
Length = 390
Score = 32.3 bits (72), Expect = 1.4
Identities = 22/91 (24%), Positives = 45/91 (49%)
Frame = -2
Query: 276 YLTI*AIVFFILVKVRNIFIYT*ACSMKKKL*SLTRLDNVYSVYSSKQFYM*SIMLLIPI 97
Y+ + ++FFI++ + + KKK ++ +L VY ++S Q+Y + P
Sbjct: 226 YVILIPVIFFIILSISRCTYIGMQNAKKKKSEAIMQLAVVY-IFSLMQYYF-YYTNVTPK 283
Query: 96 SEIRCSRF*CKFTCNYMFLLHIIRILKTLID 4
+E+ C ++C Y +++ ILK +D
Sbjct: 284 TELICFSIIALYSCFYNLFINLSTILKIKMD 314
>ref|NP_508458.1| Putative small GTPase activator with TBC domain [Caenorhabditis
elegans] gi|15055420|gb|AAA83513.2| Hypothetical protein
R11B5.1 [Caenorhabditis elegans]
Length = 614
Score = 31.2 bits (69), Expect = 3.2
Identities = 14/26 (53%), Positives = 18/26 (68%)
Frame = +1
Query: 331 STRKLGGRKCIKSNIAASIFEGLPLS 408
S RKL GR C +S+ A++ E LPLS
Sbjct: 14 SDRKLAGRSCSQSSSLATVVENLPLS 39
>gb|AAF81799.1| NADH dehydrogenase [Comolia coriacea]
Length = 327
Score = 31.2 bits (69), Expect = 3.2
Identities = 21/54 (38%), Positives = 32/54 (58%), Gaps = 4/54 (7%)
Frame = -3
Query: 392 SNIDAAILDLMHLRPPNFLVLDEF--KILFIIC*LQ*FSVYI--*LYKPLFSSF 243
SN+ ++L+HL P N + DEF +F + L F ++I LYKP++SSF
Sbjct: 243 SNLLNPSINLLHLNPTNSIDWDEFFTNSIFSVS-LAFFGIFIAFLLYKPIYSSF 295
>ref|NP_217864.1| PPE [Mycobacterium tuberculosis H37Rv] gi|7478724|pir||B70969
probable PPE protein - Mycobacterium tuberculosis (strain
H37RV) gi|2661626|emb|CAA15732.1| PPE [Mycobacterium
tuberculosis H37Rv]
Length = 3157
Score = 30.8 bits (68), Expect = 4.1
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -3
Query: 404 SGNPSNIDAAILDLMHLRPPNFLVL 330
SG PS IDAAI +L HL P N + L
Sbjct: 1360 SGQPSIIDAAIAELRHLNPLNIVNL 1384
>ref|NP_702502.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497687|gb|AAN37226.1|AE014826_25 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 3223
Score = 30.0 bits (66), Expect = 7.1
Identities = 16/53 (30%), Positives = 26/53 (48%)
Frame = -1
Query: 334 Y*MNSKFSSLFANCNSLVCIFDYISHCFLHFS*GKEYLYLYLSLLYEEEIIIF 176
Y N + S C++L C Y + F+ + +Y Y Y+ +LY I+IF
Sbjct: 1670 YPTNHIYKSYSFRCDTLNCDTKYSFYSFIEYF--PKYFYTYIEMLYINIILIF 1720
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 303,355,785
Number of Sequences: 1393205
Number of extensions: 5438916
Number of successful extensions: 12483
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12480
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
