Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003325A_C01 KMC003325A_c01
(474 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB90653.1| B1033B05.3 [Oryza sativa (japonica cultivar-grou... 59 2e-08
pir||T05027 hypothetical protein F13C5.70 - Arabidopsis thaliana... 59 3e-08
ref|NP_567566.1| Expressed protein; protein id: At4g18905.1, sup... 59 3e-08
ref|NP_567565.1| putative protein; protein id: At4g18900.1 [Arab... 55 5e-07
gb|EAA35878.1| hypothetical protein [Neurospora crassa] 37 0.081
>dbj|BAB90653.1| B1033B05.3 [Oryza sativa (japonica cultivar-group)]
gi|20161925|dbj|BAB90836.1| P0592G05.22 [Oryza sativa
(japonica cultivar-group)]
Length = 458
Score = 59.3 bits (142), Expect = 2e-08
Identities = 27/40 (67%), Positives = 32/40 (79%)
Frame = -1
Query: 474 GAVFSVVFSQDNPFLLAIGGSKGDLDVWNTLSESGVSQRF 355
GA+FSV FS D+PFLLA GGSKG L VWNTL+E V+ +F
Sbjct: 417 GAIFSVSFSNDSPFLLASGGSKGKLKVWNTLTEPAVANKF 456
>pir||T05027 hypothetical protein F13C5.70 - Arabidopsis thaliana
gi|2832618|emb|CAA16747.1| putative protein [Arabidopsis
thaliana] gi|7268684|emb|CAB78892.1| putative protein
[Arabidopsis thaliana]
Length = 964
Score = 58.5 bits (140), Expect = 3e-08
Identities = 25/40 (62%), Positives = 35/40 (87%)
Frame = -1
Query: 474 GAVFSVVFSQDNPFLLAIGGSKGDLDVWNTLSESGVSQRF 355
GAVFS+ F+ DNPFLLAIGGSKG+L VW+TL ++ V++++
Sbjct: 920 GAVFSISFAVDNPFLLAIGGSKGELHVWDTLLDANVARKY 959
>ref|NP_567566.1| Expressed protein; protein id: At4g18905.1, supported by cDNA:
gi_15292898, supported by cDNA: gi_15912304, supported
by cDNA: gi_21280826 [Arabidopsis thaliana]
gi|15292899|gb|AAK92820.1| unknown protein [Arabidopsis
thaliana] gi|15912305|gb|AAL08286.1| AT4g18900/F13C5_70
[Arabidopsis thaliana] gi|21280827|gb|AAM44990.1|
unknown protein [Arabidopsis thaliana]
Length = 494
Score = 58.5 bits (140), Expect = 3e-08
Identities = 25/40 (62%), Positives = 35/40 (87%)
Frame = -1
Query: 474 GAVFSVVFSQDNPFLLAIGGSKGDLDVWNTLSESGVSQRF 355
GAVFS+ F+ DNPFLLAIGGSKG+L VW+TL ++ V++++
Sbjct: 450 GAVFSISFAVDNPFLLAIGGSKGELHVWDTLLDANVARKY 489
>ref|NP_567565.1| putative protein; protein id: At4g18900.1 [Arabidopsis thaliana]
Length = 461
Score = 54.7 bits (130), Expect = 5e-07
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = -1
Query: 474 GAVFSVVFSQDNPFLLAIGGSKGDLDVWNTLSESGVSQRFKNR 346
G +F + FS DNPFLLA+GG G+L +W+TLS++ VS R+ +R
Sbjct: 415 GGLFFIAFSPDNPFLLAMGGVMGELKLWDTLSDTNVSSRYGSR 457
>gb|EAA35878.1| hypothetical protein [Neurospora crassa]
Length = 538
Score = 37.4 bits (85), Expect = 0.081
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -1
Query: 474 GAVFSVVFSQDNP--FLLAIGGSKGDLDVWNTLSESGVSQRFKNR 346
G VFS F D F LA+ GSKG + VW+T + +GV + F +
Sbjct: 444 GKVFSTTFGPDPEVAFRLAVAGSKGTVSVWDTSTNAGVRKFFAQK 488
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,393,761
Number of Sequences: 1393205
Number of extensions: 7369315
Number of successful extensions: 13967
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 13728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13967
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
