Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003323A_C01 KMC003323A_c01
(480 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565286.1| putative sugar nucleotide phosphorylase; protei... 54 1e-06
pir||T00613 probable sugar nucleotide phosphorylase At2g02500 [i... 54 1e-06
ref|NP_387971.1| similar to hypothetical proteins [Bacillus subt... 44 0.001
sp|Q06755|ISPD_BACSU 2-C-methyl-D-erythritol 4-phosphate cytidyl... 44 0.001
ref|NP_349781.1| 4-diphosphocytidyl-2-methylerithritol synthase ... 43 0.002
>ref|NP_565286.1| putative sugar nucleotide phosphorylase; protein id: At2g02500.1,
supported by cDNA: gi_12697582, supported by cDNA:
gi_7385140 [Arabidopsis thaliana]
gi|7385141|gb|AAF61714.1|AF230737_1
4-Diphosphocytidyl-2C-methyl-D-erythritol synthase
[Arabidopsis thaliana] gi|12697583|dbj|BAB21592.1|
2-C-methyl-D-erythritol 4-phosphate cytidyltransferase
[Arabidopsis thaliana] gi|20197092|gb|AAC18936.2|
putative sugar nucleotide phosphorylase [Arabidopsis
thaliana] gi|26451271|dbj|BAC42737.1| putative
2-C-methyl-D-erythritol 4-phosphate cytidyltransferase
[Arabidopsis thaliana]
Length = 302
Score = 53.5 bits (127), Expect = 1e-06
Identities = 24/30 (80%), Positives = 29/30 (96%)
Frame = -2
Query: 479 VYITEGSYTNIKVTTPDDLLLAEKILHENS 390
VY+++GSYTNIKVTTPDDLLLAE+IL E+S
Sbjct: 273 VYVSQGSYTNIKVTTPDDLLLAERILSEDS 302
>pir||T00613 probable sugar nucleotide phosphorylase At2g02500 [imported] -
Arabidopsis thaliana
Length = 278
Score = 53.5 bits (127), Expect = 1e-06
Identities = 24/30 (80%), Positives = 29/30 (96%)
Frame = -2
Query: 479 VYITEGSYTNIKVTTPDDLLLAEKILHENS 390
VY+++GSYTNIKVTTPDDLLLAE+IL E+S
Sbjct: 249 VYVSQGSYTNIKVTTPDDLLLAERILSEDS 278
>ref|NP_387971.1| similar to hypothetical proteins [Bacillus subtilis]
gi|2127058|pir||S66119 conserved hypothetical protein
yacM - Bacillus subtilis gi|467478|dbj|BAA05324.1|
unknown [Bacillus subtilis] gi|2632357|emb|CAB11866.1|
yacM [Bacillus subtilis subsp. subtilis str. 168]
Length = 232
Score = 43.9 bits (102), Expect = 0.001
Identities = 20/31 (64%), Positives = 23/31 (73%)
Frame = -2
Query: 479 VYITEGSYTNIKVTTPDDLLLAEKILHENSG 387
V + EGSYTNIK+TTPDDL AE I+ SG
Sbjct: 198 VRVVEGSYTNIKLTTPDDLTSAEAIMESESG 228
>sp|Q06755|ISPD_BACSU 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT)
gi|289280|gb|AAA21794.1| unknown
Length = 232
Score = 43.9 bits (102), Expect = 0.001
Identities = 20/31 (64%), Positives = 23/31 (73%)
Frame = -2
Query: 479 VYITEGSYTNIKVTTPDDLLLAEKILHENSG 387
V + EGSYTNIK+TTPDDL AE I+ SG
Sbjct: 198 VRVVEGSYTNIKLTTPDDLTSAEAIMESESG 228
>ref|NP_349781.1| 4-diphosphocytidyl-2-methylerithritol synthase (Sugar Nucleotide
Phosphorylase family) [Clostridium acetobutylicum]
gi|20138681|sp|Q97EC9|ISPD_CLOAB 2-C-methyl-D-erythritol
4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT) gi|25331383|pir||F97291
4-diphosphocytidyl-2-methylerithritol synthase (Sugar
Nucleotide Phosphorylase family) [imported] -
Clostridium acetobutylicum
gi|15026253|gb|AAK81121.1|AE007813_8
4-diphosphocytidyl-2-methylerithritol synthase (Sugar
Nucleotide Phosphorylase family) [Clostridium
acetobutylicum]
Length = 229
Score = 43.1 bits (100), Expect = 0.002
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = -2
Query: 479 VYITEGSYTNIKVTTPDDLLLAEKILHENS 390
VY+ +GSY N+K+TTPDDL AE +L +NS
Sbjct: 198 VYLYDGSYENLKITTPDDLYAAETLLKKNS 227
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,906,297
Number of Sequences: 1393205
Number of extensions: 8546199
Number of successful extensions: 19436
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 19098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19436
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
