Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003321A_C01 KMC003321A_c01
(442 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T04987 hypothetical protein T16L1.190 - Arabidopsis thalian... 92 1e-18
ref|NP_195096.2| putative protein; protein id: At4g33700.1, supp... 92 1e-18
pir||A96514 hypothetical protein T3F24.6 [imported] - Arabidopsi... 64 4e-10
ref|NP_175166.2| unknown protein; protein id: At1g47330.1, suppo... 64 4e-10
ref|NP_179058.1| hypothetical protein; protein id: At2g14520.1 [... 56 1e-07
>pir||T04987 hypothetical protein T16L1.190 - Arabidopsis thaliana
gi|3549672|emb|CAA20583.1| putative protein [Arabidopsis
thaliana] gi|7270319|emb|CAB80087.1| putative protein
[Arabidopsis thaliana]
Length = 411
Score = 92.4 bits (228), Expect = 1e-18
Identities = 44/54 (81%), Positives = 50/54 (92%)
Frame = -1
Query: 442 SKNMYSDILEIDGNPLPHMPEEEEAVGIITMEDVIEELLQEEIFDETDHHFEDS 281
SK+ +DIL+++GNPLP + EEEEAVGIITMEDVIEELLQEEIFDETDHHFEDS
Sbjct: 358 SKDNDADILQLNGNPLPKLAEEEEAVGIITMEDVIEELLQEEIFDETDHHFEDS 411
>ref|NP_195096.2| putative protein; protein id: At4g33700.1, supported by cDNA:
gi_17381275, supported by cDNA: gi_20856057 [Arabidopsis
thaliana] gi|17381276|gb|AAL36056.1| AT4g33700/T16L1_190
[Arabidopsis thaliana] gi|20856058|gb|AAM26645.1|
AT4g33700/T16L1_190 [Arabidopsis thaliana]
Length = 424
Score = 92.4 bits (228), Expect = 1e-18
Identities = 44/54 (81%), Positives = 50/54 (92%)
Frame = -1
Query: 442 SKNMYSDILEIDGNPLPHMPEEEEAVGIITMEDVIEELLQEEIFDETDHHFEDS 281
SK+ +DIL+++GNPLP + EEEEAVGIITMEDVIEELLQEEIFDETDHHFEDS
Sbjct: 371 SKDNDADILQLNGNPLPKLAEEEEAVGIITMEDVIEELLQEEIFDETDHHFEDS 424
>pir||A96514 hypothetical protein T3F24.6 [imported] - Arabidopsis thaliana
gi|9993348|gb|AAG11421.1|AC015449_3 Unknown protein
[Arabidopsis thaliana]
Length = 499
Score = 63.9 bits (154), Expect = 4e-10
Identities = 29/43 (67%), Positives = 34/43 (78%)
Frame = -1
Query: 421 ILEIDGNPLPHMPEEEEAVGIITMEDVIEELLQEEIFDETDHH 293
IL+I+ P+P P EE VG+ITMEDVIEELLQEEI DETD +
Sbjct: 369 ILDIENTPIPDFPTNEEVVGVITMEDVIEELLQEEILDETDEY 411
>ref|NP_175166.2| unknown protein; protein id: At1g47330.1, supported by cDNA:
gi_19715639 [Arabidopsis thaliana]
gi|19715640|gb|AAL91640.1| At1g47330/T3F24_2
[Arabidopsis thaliana] gi|22137130|gb|AAM91410.1|
At1g47330/T3F24_2 [Arabidopsis thaliana]
Length = 527
Score = 63.9 bits (154), Expect = 4e-10
Identities = 29/43 (67%), Positives = 34/43 (78%)
Frame = -1
Query: 421 ILEIDGNPLPHMPEEEEAVGIITMEDVIEELLQEEIFDETDHH 293
IL+I+ P+P P EE VG+ITMEDVIEELLQEEI DETD +
Sbjct: 397 ILDIENTPIPDFPTNEEVVGVITMEDVIEELLQEEILDETDEY 439
>ref|NP_179058.1| hypothetical protein; protein id: At2g14520.1 [Arabidopsis
thaliana] gi|25411569|pir||B84518 hypothetical protein
At2g14520 [imported] - Arabidopsis thaliana
gi|4263821|gb|AAD15464.1| hypothetical protein
[Arabidopsis thaliana]
Length = 408
Score = 55.8 bits (133), Expect = 1e-07
Identities = 27/40 (67%), Positives = 35/40 (87%)
Frame = -1
Query: 442 SKNMYSDILEIDGNPLPHMPEEEEAVGIITMEDVIEELLQ 323
SK+ +DIL+++ +PLP + EEE+AVGIITMEDVIEELLQ
Sbjct: 358 SKDNDADILQLNEHPLPKLDEEEDAVGIITMEDVIEELLQ 397
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,546,047
Number of Sequences: 1393205
Number of extensions: 7120297
Number of successful extensions: 20681
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 17143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19663
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
