Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003319A_C01 KMC003319A_c01
(644 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC10210.1| hypothetical protein [Cicer arietinum] 129 4e-29
ref|NP_200019.1| putative protein; protein id: At5g52060.1 [Arab... 75 6e-13
gb|AAM61448.1| unknown [Arabidopsis thaliana] 65 1e-09
ref|NP_196339.1| putative protein; protein id: At5g07220.1, supp... 65 1e-09
gb|AAM62536.1| unknown [Arabidopsis thaliana] 61 1e-08
>emb|CAC10210.1| hypothetical protein [Cicer arietinum]
Length = 262
Score = 129 bits (323), Expect = 4e-29
Identities = 76/140 (54%), Positives = 91/140 (64%), Gaps = 18/140 (12%)
Frame = -1
Query: 644 RVQKYVETLDILKVKNSMAKTNGGHAQMKPQQKHLNGKRLATIQEQPQSV-SNGHHRLQQ 468
RVQKYVET+D+LKVK+ M NG HA ++PQQK+ NGKRL TI+EQPQ + SNG Q
Sbjct: 127 RVQKYVETMDMLKVKSYMIG-NGVHAPIQPQQKNSNGKRLETIEEQPQQIYSNGSIVPIQ 185
Query: 467 NVEQQQRDSNG-----------------NSNSEVVVTTKWETFDSLPPLIPVTSTSSSST 339
+Q+Q+ N NS S VVVTTKWETFDS+PPLI + ST ST
Sbjct: 186 EQQQEQQARNNSKELSLIFEEHENQPSNNSTSGVVVTTKWETFDSMPPLITLPST---ST 242
Query: 338 SSSVMTNNSVHPKFNWEFFD 279
+ S+ NNS PKFNWEFFD
Sbjct: 243 NHSMTNNNSTPPKFNWEFFD 262
>ref|NP_200019.1| putative protein; protein id: At5g52060.1 [Arabidopsis thaliana]
gi|10177741|dbj|BAB11054.1| contains similarity to
unknown protein~emb|CAB87278.1~gene_id:MSG15.15
[Arabidopsis thaliana]
Length = 326
Score = 75.5 bits (184), Expect = 6e-13
Identities = 51/129 (39%), Positives = 75/129 (57%), Gaps = 7/129 (5%)
Frame = -1
Query: 644 RVQKYVETLDILKVKNSMA----KTNGGHAQMKPQQKHLNGKRLATIQEQPQSVSN---G 486
RVQ YVETLD LKVKNSMA K + ++ P Q+H N +R Q+ QS+ +
Sbjct: 210 RVQNYVETLDALKVKNSMANGQQKQSSTAQRLAPIQEHNNEERQE--QKPIQSLMDMPIQ 267
Query: 485 HHRLQQNVEQQQRDSNGNSNSEVVVTTKWETFDSLPPLIPVTSTSSSSTSSSVMTNNSVH 306
+ +Q +E++ R+S G + + KWETFD P+ P++ST++ NN++
Sbjct: 268 YKEKKQEIEEEPRNS-GEGPFVLDSSAKWETFDH-HPVTPLSSTTAK--------NNAIP 317
Query: 305 PKFNWEFFD 279
P+FNWEFFD
Sbjct: 318 PRFNWEFFD 326
>gb|AAM61448.1| unknown [Arabidopsis thaliana]
Length = 300
Score = 64.7 bits (156), Expect = 1e-09
Identities = 48/125 (38%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Frame = -1
Query: 644 RVQKYVETLDILKVKNSMAKTN-GGHAQMKPQQKHLNGKRLATIQEQPQSVSNGHHRLQQ 468
RVQKYVE LD+LKVKNS K + KPQ + T EQ +S +
Sbjct: 201 RVQKYVEALDLLKVKNSAKKVEVNKSVRHKPQTQ--------TRFEQRDLLS-----FVE 247
Query: 467 NVEQQQRDSNGNSNS--EVVVTTKWETFDSLPPLIPVTSTSSSSTSSSVMTNNSVHPKFN 294
E++ R+SN +S+S VV +KWE FD S+ST+ + T V P+F
Sbjct: 248 EEEEEPRNSNASSSSGTPAVVASKWEMFD------------SASTAKAAETVKPVPPRFK 295
Query: 293 WEFFD 279
WEFFD
Sbjct: 296 WEFFD 300
>ref|NP_196339.1| putative protein; protein id: At5g07220.1, supported by cDNA:
12022., supported by cDNA: gi_16226482 [Arabidopsis
thaliana] gi|11292136|pir||T48493 hypothetical protein
T28J14.160 - Arabidopsis thaliana
gi|7546700|emb|CAB87278.1| putative protein [Arabidopsis
thaliana] gi|16226483|gb|AAL16179.1|AF428411_1
AT5g07220/T28J14_160 [Arabidopsis thaliana]
Length = 303
Score = 64.7 bits (156), Expect = 1e-09
Identities = 48/125 (38%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Frame = -1
Query: 644 RVQKYVETLDILKVKNSMAKTN-GGHAQMKPQQKHLNGKRLATIQEQPQSVSNGHHRLQQ 468
RVQKYVE LD+LKVKNS K + KPQ + T EQ +S +
Sbjct: 204 RVQKYVEALDLLKVKNSAKKVEVNKSVRHKPQTQ--------TRFEQRDLLS-----FVE 250
Query: 467 NVEQQQRDSNGNSNS--EVVVTTKWETFDSLPPLIPVTSTSSSSTSSSVMTNNSVHPKFN 294
E++ R+SN +S+S VV +KWE FD S+ST+ + T V P+F
Sbjct: 251 EEEEEPRNSNASSSSGTPAVVASKWEMFD------------SASTAKAAETVKPVPPRFK 298
Query: 293 WEFFD 279
WEFFD
Sbjct: 299 WEFFD 303
>gb|AAM62536.1| unknown [Arabidopsis thaliana]
Length = 293
Score = 61.2 bits (147), Expect = 1e-08
Identities = 39/122 (31%), Positives = 60/122 (48%)
Frame = -1
Query: 644 RVQKYVETLDILKVKNSMAKTNGGHAQMKPQQKHLNGKRLATIQEQPQSVSNGHHRLQQN 465
R+ KYVE LD+LK+KNS + KPQ K + + T E
Sbjct: 206 RLHKYVEALDLLKIKNSRQP----QTKPKPQYKE---REMLTFYE--------------- 243
Query: 464 VEQQQRDSNGNSNSEVVVTTKWETFDSLPPLIPVTSTSSSSTSSSVMTNNSVHPKFNWEF 285
E ++ + +S+ V++TT+WETFD SSS++++++ VHPKF WE
Sbjct: 244 -EASRKPTASSSSPPVIITTRWETFD-----------SSSASTATLQPVRPVHPKFKWEL 291
Query: 284 FD 279
F+
Sbjct: 292 FN 293
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,297,827
Number of Sequences: 1393205
Number of extensions: 12043785
Number of successful extensions: 45150
Number of sequences better than 10.0: 138
Number of HSP's better than 10.0 without gapping: 36278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42862
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
