Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003317A_C04 KMC003317A_c04
(1170 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB01769.1| cysteine proteinase homolog 52 2e-05
sp|P41715|CATV_NPVCF Viral cathepsin (V-cath) (Cysteine proteina... 46 0.001
ref|NP_046281.1| cathepsin [Orgyia pseudotsugata multicapsid nuc... 44 0.005
dbj|BAA25899.1| Bd 30K [Glycine max] 44 0.005
ref|NP_567983.1| cysteine protease XCP1; protein id: At4g35350.1... 43 0.008
>gb|AAB01769.1| cysteine proteinase homolog
Length = 347
Score = 51.6 bits (122), Expect = 2e-05
Identities = 32/101 (31%), Positives = 53/101 (51%), Gaps = 8/101 (7%)
Frame = -1
Query: 921 KGLSEGEARELFECWCRKYRKIYPSEEHKLYRFTVFKETLERCTIEAHV--------HVY 766
K L+E E ++LF + RKY K+Y +EEH R+ +FK +E+ HV +
Sbjct: 22 KPLAESEMKKLFIKFSRKYAKVYGTEEHN-NRYQIFKANVEKSRYYNHVGKRENFGITKF 80
Query: 765 ADLTSQERKGLFFQKPLYSPDPDSTLIPNPDGSFYSQTEAR 643
+DLT +E K +F K Y+P+ ++ P + S+ E +
Sbjct: 81 SDLTPEEFKRMFLMK-TYTPEEAKKILAAPQHAVLSEKEVQ 120
>sp|P41715|CATV_NPVCF Viral cathepsin (V-cath) (Cysteine proteinase) (CP)
gi|2120168|pir||S62735 cathepsin - Choristoneura
fumiferana nuclear polyhedrosis virus
gi|332509|gb|AAA96732.1| cathepsin
Length = 324
Score = 46.2 bits (108), Expect = 0.001
Identities = 24/68 (35%), Positives = 38/68 (55%)
Frame = -1
Query: 663 YSQTEARQVFEIWCNHYHRSYPSEPEKLYRFTVFKESLEFVARLNHKRDHPKAASFSICS 484
Y +A FE + + +++SY SE EKL RF +F+ +LE + NH + A + I
Sbjct: 19 YDVLKAPNYFEDFLHKFNKSYSSESEKLRRFQIFRHNLEEIINKNH---NDSTAQYEINK 75
Query: 483 LADLTSEE 460
ADL+ +E
Sbjct: 76 FADLSKDE 83
>ref|NP_046281.1| cathepsin [Orgyia pseudotsugata multicapsid nucleopolyhedrovirus]
gi|2499880|sp|O10364|CATV_NPVOP Viral cathepsin (V-CATH)
(Cysteine proteinase) (CP) gi|7435821|pir||T10394
cathepsin - Orgyia pseudotsugata nuclear polyhedrosis
virus gi|1911371|gb|AAC59124.1| cathepsin [Orgyia
pseudotsugata multicapsid nucleopolyhedrovirus]
Length = 324
Score = 43.9 bits (102), Expect = 0.005
Identities = 22/68 (32%), Positives = 39/68 (57%)
Frame = -1
Query: 663 YSQTEARQVFEIWCNHYHRSYPSEPEKLYRFTVFKESLEFVARLNHKRDHPKAASFSICS 484
Y +A FE + + ++++Y SE EKL+RF +F+ +LE + +K + A + I
Sbjct: 19 YDLLKAPNYFEDFLHKFNKNYSSESEKLHRFKIFQHNLE---EIINKNQNDSTAQYEINK 75
Query: 483 LADLTSEE 460
+DL+ EE
Sbjct: 76 FSDLSKEE 83
>dbj|BAA25899.1| Bd 30K [Glycine max]
Length = 379
Score = 43.9 bits (102), Expect = 0.005
Identities = 18/69 (26%), Positives = 36/69 (52%)
Frame = -1
Query: 666 FYSQTEARQVFEIWCNHYHRSYPSEPEKLYRFTVFKESLEFVARLNHKRDHPKAASFSIC 487
F +Q + +F++W + + R Y + E+ R +FK +L ++ +N R P + +
Sbjct: 34 FTTQKQVSSLFQLWKSEHGRVYHNHEEEAKRLEIFKNNLNYIRDMNANRKSPHSHRLGLN 93
Query: 486 SLADLTSEE 460
AD+T +E
Sbjct: 94 KFADITPQE 102
>ref|NP_567983.1| cysteine protease XCP1; protein id: At4g35350.1, supported by cDNA:
gi_6708180 [Arabidopsis thaliana] gi|7435808|pir||T06122
cysteine proteinase (EC 3.4.22.-) F23E12.90 -
Arabidopsis thaliana gi|3080415|emb|CAA18734.1| cysteine
proteinase-like protein [Arabidopsis thaliana]
gi|6708181|gb|AAF25831.1|AF191027_1 papain-type cysteine
endopeptidase XCP1 [Arabidopsis thaliana]
gi|7270487|emb|CAB80252.1| cysteine proteinase-like
protein [Arabidopsis thaliana]
gi|26449881|dbj|BAC42063.1| putative cysteine proteinase
[Arabidopsis thaliana] gi|28827736|gb|AAO50712.1|
unknown protein [Arabidopsis thaliana]
Length = 355
Score = 43.1 bits (100), Expect = 0.008
Identities = 28/72 (38%), Positives = 39/72 (53%), Gaps = 10/72 (13%)
Frame = -1
Query: 894 ELFECWCRKYRKIYPSEEHKLYRFTVFKETL--------ERCTIEAHVHVYADLTSQERK 739
ELFE W ++ K Y S E K++RF VF+E L E + ++ +ADLT +E K
Sbjct: 49 ELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINSYWLGLNEFADLTHEEFK 108
Query: 738 G--LFFQKPLYS 709
G L KP +S
Sbjct: 109 GRYLGLAKPQFS 120
Score = 39.7 bits (91), Expect = 0.093
Identities = 20/61 (32%), Positives = 37/61 (59%)
Frame = -1
Query: 642 QVFEIWCNHYHRSYPSEPEKLYRFTVFKESLEFVARLNHKRDHPKAASFSICSLADLTSE 463
++FE W + + ++Y S EK++RF VF+E+L + + N++ + + + ADLT E
Sbjct: 49 ELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEIN---SYWLGLNEFADLTHE 105
Query: 462 E 460
E
Sbjct: 106 E 106
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,061,652,703
Number of Sequences: 1393205
Number of extensions: 24875696
Number of successful extensions: 68880
Number of sequences better than 10.0: 128
Number of HSP's better than 10.0 without gapping: 64866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68851
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 72478196208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
