KMC003316A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC003316A_C01 KMC003316A_c01
aagagacaaatatGGCAAGGAGGACATTTTTATTGCTGTAACATGTTCAAATGCCATATA
ATAGTACACATGAAAATGCAAATTAACTAGATTTTTTCACGCAAAACTTAAAAAAAAAAA
AGTTGAACTGGAACTTGATTAGTTCCAGAAATATATTACATTATCATTTCATCTTCAAAA
GTGAATGTTACAATATCTATAGTTATCATGCCTCATTCAACATAATCTCACAGATCACTG
CATCTGTTCTCAGATCTCAGAGAAGGAACTGATTGTCTTCAACCCGTGATTCTCAGGGAG
AGGTGCATTTCCAGGCCGAATAGAAATTATGACCTCCAGACCTGCTGCTTTAGCAGCTGT
AGCTTCTTGAAAAACATCAGTTACAAATAAGATATCTGATGGCTTATCAACGCCAAGTGA
TGCAGAAATTTCAACATAACTGTGTGTTTCTCTTTGGTTCCCCACTGTGGTATCAAAAAA
CCCAGATAAATATTTTCTTAGGTCCCCATGGTTTGTATGTCCAAATATTAGCCTTTGCGC
CAACCTGCTACCACTAGAATATATGTATACCTTTATGCCCAAGGCATGCCACTTTTCCAA
GGCTTCTGGTACATCATCAAAA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003316A_C01 KMC003316A_c01
(622 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200196.1| putative protein; protein id: At5g53850.1 [Arab... 199 2e-50
dbj|BAB62625.1| hypothetical protein~similar to Arabidopsis thal... 164 1e-39
gb|EAA09634.1| agCP15510 [Anopheles gambiae str. PEST] 114 1e-24
gb|EAA12926.1| agCP14292 [Anopheles gambiae str. PEST] 114 1e-24
ref|NP_649523.1| CG12173-PA [Drosophila melanogaster] gi|2317043... 114 1e-24
>ref|NP_200196.1| putative protein; protein id: At5g53850.1 [Arabidopsis thaliana]
gi|10177247|dbj|BAB10715.1| contains similarity to
enolase-phosphatase~gene_id:K19P17.1 [Arabidopsis
thaliana]
Length = 507
Score = 199 bits (506), Expect = 2e-50
Identities = 92/123 (74%), Positives = 113/123 (91%)
Frame = -2
Query: 621 FDDVPEALEKWHALGIKVYIYSSGSRLAQRLIFGHTNHGDLRKYLSGFFDTTVGNQRETH 442
F+DV +ALEKWH+ GIKVYIYSSGSRLAQ+L+FG+T++GDLRKY+SGFFDTT+GN++E+
Sbjct: 385 FEDVADALEKWHSSGIKVYIYSSGSRLAQKLLFGNTDYGDLRKYISGFFDTTIGNKKESR 444
Query: 441 SYVEISASLGVDKPSDILFVTDVFQEATAAKAAGLEVIISIRPGNAPLPENHGLKTISSF 262
SY EI +LGVD P++I+FVTDV+QEA AAKAAGLE IISIRPGNAPLPENHG KT++SF
Sbjct: 445 SYKEIKETLGVDDPAEIMFVTDVYQEAVAAKAAGLEAIISIRPGNAPLPENHGFKTVTSF 504
Query: 261 SEI 253
S+I
Sbjct: 505 SQI 507
>dbj|BAB62625.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 3,
F28J7.34 [Oryza sativa (japonica cultivar-group)]
gi|15408849|dbj|BAB64238.1| P0672D08.11 [Oryza sativa
(japonica cultivar-group)] gi|20804430|dbj|BAB92127.1|
hypothetical protein~similar to Arabidopsis thaliana
chromosome 3, F28J7.34 [Oryza sativa (japonica
cultivar-group)]
Length = 1122
Score = 164 bits (414), Expect = 1e-39
Identities = 83/124 (66%), Positives = 98/124 (78%), Gaps = 1/124 (0%)
Frame = -2
Query: 621 FDDVPEALEKWHALGIKVYIYSSGSRLAQRLIFGHTN-HGDLRKYLSGFFDTTVGNQRET 445
+DD +AL +W A K YIYSSGSR AQRLIF +T HGDLR +L GFFDTT+G +RE
Sbjct: 1000 YDDAADALRRWRA---KAYIYSSGSREAQRLIFANTAAHGDLRDHLCGFFDTTIGAKREV 1056
Query: 444 HSYVEISASLGVDKPSDILFVTDVFQEATAAKAAGLEVIISIRPGNAPLPENHGLKTISS 265
SY EI +LG D+PS ILF+TDV+QEA AAK AGLEVIIS+RPGNAPLP+NHG TI+S
Sbjct: 1057 SSYYEIWQTLGTDRPSQILFLTDVYQEAAAAKTAGLEVIISVRPGNAPLPDNHGFHTITS 1116
Query: 264 FSEI 253
F+EI
Sbjct: 1117 FAEI 1120
>gb|EAA09634.1| agCP15510 [Anopheles gambiae str. PEST]
Length = 691
Score = 114 bits (285), Expect = 1e-24
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 2/125 (1%)
Frame = -2
Query: 621 FDDVPEALEKWHALGIKVYIYSSGSRLAQRLIFGHTNHGDLRKYLSGFFDTTVGNQRETH 442
+DDV +A E+W G K+YIYSSGS AQ+L+F H+ GDL KYLSG +DT +G +RE
Sbjct: 138 YDDVQKAFEQWTENGRKIYIYSSGSVDAQKLLFEHSEQGDLLKYLSGHYDTKIGAKREKE 197
Query: 441 SYVEISASLGVDKPSDILFVTDVFQEATAAKAAGLEVIISIRPGNAPLPENH--GLKTIS 268
SY I ++ P + LF+TDV+ EA AAK AGL V++ RPGN+ L E I+
Sbjct: 198 SYTSILKNI-ESSPEEALFLTDVYAEAKAAKEAGLNVVLLDRPGNSELSEEERKDFPVIA 256
Query: 267 SFSEI 253
+FS++
Sbjct: 257 TFSDL 261
>gb|EAA12926.1| agCP14292 [Anopheles gambiae str. PEST]
Length = 691
Score = 114 bits (285), Expect = 1e-24
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 2/125 (1%)
Frame = -2
Query: 621 FDDVPEALEKWHALGIKVYIYSSGSRLAQRLIFGHTNHGDLRKYLSGFFDTTVGNQRETH 442
+DDV +A E+W G K+YIYSSGS AQ+L+F H+ GDL KYLSG +DT +G +RE
Sbjct: 138 YDDVQKAFEQWTENGRKIYIYSSGSVDAQKLLFEHSEQGDLLKYLSGHYDTKIGAKREKE 197
Query: 441 SYVEISASLGVDKPSDILFVTDVFQEATAAKAAGLEVIISIRPGNAPLPENH--GLKTIS 268
SY I ++ P + LF+TDV+ EA AAK AGL V++ RPGN+ L E I+
Sbjct: 198 SYTSILKNI-ESSPEEALFLTDVYAEAKAAKEAGLNVVLLDRPGNSELSEEERKDFPVIA 256
Query: 267 SFSEI 253
+FS++
Sbjct: 257 TFSDL 261
>ref|NP_649523.1| CG12173-PA [Drosophila melanogaster] gi|23170430|gb|AAF52053.2|
CG12173-PA [Drosophila melanogaster]
Length = 256
Score = 114 bits (284), Expect = 1e-24
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 2/125 (1%)
Frame = -2
Query: 621 FDDVPEALEKWHALGIKVYIYSSGSRLAQRLIFGHTNHGDLRKYLSGFFDTTVGNQRETH 442
++DVP A E W A G+++ +YSSGS AQ+LIFGH+ G+L+ YLS +FDT VG+++E
Sbjct: 121 YEDVPAAFEAWRAAGLQIAVYSSGSVAAQKLIFGHSLAGNLQPYLSAYFDTHVGHKQEQQ 180
Query: 441 SYVEISASLGVDKPSDILFVTDVFQEATAAKAAGLEVIISIRPGNAPLPENH--GLKTIS 268
SY I+ L D P ILF+TD+ EA AA+ AGL+ II RPGNA L ++ G + I
Sbjct: 181 SYKNIAKQLKED-PKQILFLTDIPGEAAAARCAGLQAIILKRPGNAALADDQKTGFELIP 239
Query: 267 SFSEI 253
F +
Sbjct: 240 DFKPL 244
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,552,238
Number of Sequences: 1393205
Number of extensions: 11363733
Number of successful extensions: 23639
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 22969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23600
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MR033d05_f |
BP078541 |
1 |
389 |
2 |
GNf034c11 |
BP069832 |
14 |
396 |
3 |
SPD057c03_f |
BP048520 |
63 |
625 |
|
Lotus japonicus
Kazusa DNA Research Institute