Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003315A_C01 KMC003315A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189062.1| flavin-dependent hydroxylase VisC-related; prot... 147 7e-35
dbj|BAB01361.1| gb|AAD27719.1~gene_id:MUJ8.10~similar to unknown... 147 7e-35
gb|AAO41133.1| putative oxygenase [Oryza sativa (japonica cultiv... 133 1e-30
sp|Q9Y2Z9|COQ6_HUMAN Ubiquinone biosynthesis monooxgenase COQ6 (... 62 4e-09
ref|NP_057024.1| CGI-10 protein [Homo sapiens] gi|4680659|gb|AAD... 62 4e-09
>ref|NP_189062.1| flavin-dependent hydroxylase VisC-related; protein id: At3g24200.1
[Arabidopsis thaliana]
Length = 509
Score = 147 bits (372), Expect = 7e-35
Identities = 72/95 (75%), Positives = 82/95 (85%)
Frame = -1
Query: 579 LGFGDAFSLSRTIAEGIALGSDIGEVNLLRKYEAERKPANIMMMAVLDGFQKAYSIDFGP 400
LGF DA +LS+ IAEGIALG+DIGE NLL++YEAERKPANI MMAVLDG QK YS+DFGP
Sbjct: 414 LGFADACALSKAIAEGIALGTDIGEANLLKRYEAERKPANIAMMAVLDGIQKMYSLDFGP 473
Query: 399 FNFLRAAAFQGANYISPLKRSIISYASGDHKLPIF 295
N LRAAAF GA+YISPLK+ IISYASG+ LP+F
Sbjct: 474 LNALRAAAFHGAHYISPLKKRIISYASGEQSLPLF 508
>dbj|BAB01361.1| gb|AAD27719.1~gene_id:MUJ8.10~similar to unknown protein
[Arabidopsis thaliana]
Length = 486
Score = 147 bits (372), Expect = 7e-35
Identities = 72/95 (75%), Positives = 82/95 (85%)
Frame = -1
Query: 579 LGFGDAFSLSRTIAEGIALGSDIGEVNLLRKYEAERKPANIMMMAVLDGFQKAYSIDFGP 400
LGF DA +LS+ IAEGIALG+DIGE NLL++YEAERKPANI MMAVLDG QK YS+DFGP
Sbjct: 391 LGFADACALSKAIAEGIALGTDIGEANLLKRYEAERKPANIAMMAVLDGIQKMYSLDFGP 450
Query: 399 FNFLRAAAFQGANYISPLKRSIISYASGDHKLPIF 295
N LRAAAF GA+YISPLK+ IISYASG+ LP+F
Sbjct: 451 LNALRAAAFHGAHYISPLKKRIISYASGEQSLPLF 485
>gb|AAO41133.1| putative oxygenase [Oryza sativa (japonica cultivar-group)]
Length = 516
Score = 133 bits (335), Expect = 1e-30
Identities = 61/95 (64%), Positives = 79/95 (82%)
Frame = -1
Query: 579 LGFGDAFSLSRTIAEGIALGSDIGEVNLLRKYEAERKPANIMMMAVLDGFQKAYSIDFGP 400
LGFGDA +L++ IAEG+++G+D G+++LL++YE RK AN+ M A+LDGFQK YS+DFGP
Sbjct: 421 LGFGDAAALAKVIAEGVSVGADFGDISLLKRYENNRKAANVAMAALLDGFQKMYSVDFGP 480
Query: 399 FNFLRAAAFQGANYISPLKRSIISYASGDHKLPIF 295
N LRAAAF GA YISPLK++IISYA GD K P+F
Sbjct: 481 LNVLRAAAFHGAQYISPLKKNIISYAMGDAKWPLF 515
>sp|Q9Y2Z9|COQ6_HUMAN Ubiquinone biosynthesis monooxgenase COQ6 (CGI-10)
gi|15559649|gb|AAH14181.1|AAH14181 Unknown (protein for
MGC:20780) [Homo sapiens]
Length = 468
Score = 62.4 bits (150), Expect = 4e-09
Identities = 32/87 (36%), Positives = 47/87 (53%)
Frame = -1
Query: 579 LGFGDAFSLSRTIAEGIALGSDIGEVNLLRKYEAERKPANIMMMAVLDGFQKAYSIDFGP 400
+GFGD SL+ ++ G D+G V+ L YE ER+ N ++A D ++ YS P
Sbjct: 381 MGFGDISSLAHHLSTAAFNGKDLGSVSHLTGYETERQRHNTALLAATDLLKRLYSTSASP 440
Query: 399 FNFLRAAAFQGANYISPLKRSIISYAS 319
LR Q N +SPLK I+++AS
Sbjct: 441 LVLLRTWGLQATNAVSPLKEQIMAFAS 467
>ref|NP_057024.1| CGI-10 protein [Homo sapiens] gi|4680659|gb|AAD27719.1|AF132944_1
CGI-10 protein [Homo sapiens]
Length = 468
Score = 62.4 bits (150), Expect = 4e-09
Identities = 32/87 (36%), Positives = 47/87 (53%)
Frame = -1
Query: 579 LGFGDAFSLSRTIAEGIALGSDIGEVNLLRKYEAERKPANIMMMAVLDGFQKAYSIDFGP 400
+GFGD SL+ ++ G D+G V+ L YE ER+ N ++A D ++ YS P
Sbjct: 381 MGFGDISSLAHHLSTAAFNGKDLGSVSHLTGYETERQRHNTALLAATDLLKRLYSTSASP 440
Query: 399 FNFLRAAAFQGANYISPLKRSIISYAS 319
LR Q N +SPLK I+++AS
Sbjct: 441 LVLLRTWGLQATNAVSPLKEQIMAFAS 467
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,863,102
Number of Sequences: 1393205
Number of extensions: 10017686
Number of successful extensions: 34724
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 33362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34669
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
