Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003314A_C01 KMC003314A_c01
(643 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565503.1| expressed protein; protein id: At2g21240.1, sup... 137 2e-44
ref|NP_568605.1| putative protein; protein id: At5g42520.1, supp... 137 1e-42
dbj|BAB10493.1| gb|AAF18661.1~gene_id:MDH9.22~similar to unknown... 137 1e-42
ref|NP_195602.1| putative protein; protein id: At4g38910.1 [Arab... 134 1e-30
gb|AAM96822.1| hypothetical protein [Arabidopsis thaliana] 92 8e-30
>ref|NP_565503.1| expressed protein; protein id: At2g21240.1, supported by cDNA:
111536. [Arabidopsis thaliana] gi|25412022|pir||H84598
hypothetical protein At2g21240 [imported] - Arabidopsis
thaliana gi|20198118|gb|AAM15408.1| expressed protein
[Arabidopsis thaliana] gi|21536789|gb|AAM61121.1|
unknown [Arabidopsis thaliana]
Length = 296
Score = 137 bits (344), Expect(2) = 2e-44
Identities = 57/71 (80%), Positives = 65/71 (91%)
Frame = -2
Query: 642 GLNLIAFDETIMPVPVCTCTGIARQCYKWGNGGWQSSCCTTTLSVYPLPQLPNKRHARIG 463
GLNL+ FDET MPVP+C+CTG RQCYKWGNGGWQSSCCTTTLS YPLPQ+PNKRH+R+G
Sbjct: 192 GLNLVTFDETTMPVPMCSCTGSTRQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRMG 251
Query: 462 GRKMSGSVFHK 430
GRKMSG+VF +
Sbjct: 252 GRKMSGNVFSR 262
Score = 64.7 bits (156), Expect(2) = 2e-44
Identities = 27/36 (75%), Positives = 35/36 (97%)
Frame = -3
Query: 434 TRLLSKLASEGHDISIPLDLKNYWARHGTNRYITIK 327
+RLLS+L++EG+D+S P+DLK+YWARHGTNRYITIK
Sbjct: 261 SRLLSRLSAEGYDLSCPVDLKDYWARHGTNRYITIK 296
>ref|NP_568605.1| putative protein; protein id: At5g42520.1, supported by cDNA: 7878.
[Arabidopsis thaliana] gi|21618292|gb|AAM67342.1|
unknown [Arabidopsis thaliana]
Length = 342
Score = 137 bits (344), Expect(2) = 1e-42
Identities = 57/71 (80%), Positives = 64/71 (89%)
Frame = -2
Query: 642 GLNLIAFDETIMPVPVCTCTGIARQCYKWGNGGWQSSCCTTTLSVYPLPQLPNKRHARIG 463
GLN + +DET MP PVC+CTG+ RQCYKWGNGGWQSSCCTTTLS+YPLP LPNKRHAR+G
Sbjct: 237 GLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVG 296
Query: 462 GRKMSGSVFHK 430
GRKMSGS F+K
Sbjct: 297 GRKMSGSAFNK 307
Score = 58.2 bits (139), Expect(2) = 1e-42
Identities = 26/36 (72%), Positives = 34/36 (94%), Gaps = 1/36 (2%)
Frame = -3
Query: 431 RLLSKLASEGH-DISIPLDLKNYWARHGTNRYITIK 327
+LLS+LA+EGH D+S P+DLK++WA+HGTNRYITIK
Sbjct: 307 KLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK 342
>dbj|BAB10493.1| gb|AAF18661.1~gene_id:MDH9.22~similar to unknown protein
[Arabidopsis thaliana]
Length = 301
Score = 137 bits (344), Expect(2) = 1e-42
Identities = 57/71 (80%), Positives = 64/71 (89%)
Frame = -2
Query: 642 GLNLIAFDETIMPVPVCTCTGIARQCYKWGNGGWQSSCCTTTLSVYPLPQLPNKRHARIG 463
GLN + +DET MP PVC+CTG+ RQCYKWGNGGWQSSCCTTTLS+YPLP LPNKRHAR+G
Sbjct: 196 GLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVG 255
Query: 462 GRKMSGSVFHK 430
GRKMSGS F+K
Sbjct: 256 GRKMSGSAFNK 266
Score = 58.2 bits (139), Expect(2) = 1e-42
Identities = 26/36 (72%), Positives = 34/36 (94%), Gaps = 1/36 (2%)
Frame = -3
Query: 431 RLLSKLASEGH-DISIPLDLKNYWARHGTNRYITIK 327
+LLS+LA+EGH D+S P+DLK++WA+HGTNRYITIK
Sbjct: 266 KLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK 301
>ref|NP_195602.1| putative protein; protein id: At4g38910.1 [Arabidopsis thaliana]
gi|7452442|pir||T06051 hypothetical protein F19H22.10 -
Arabidopsis thaliana gi|4539310|emb|CAB38811.1| putative
protein [Arabidopsis thaliana]
gi|7270874|emb|CAB80554.1| putative protein [Arabidopsis
thaliana]
Length = 445
Score = 134 bits (336), Expect = 1e-30
Identities = 56/68 (82%), Positives = 62/68 (90%)
Frame = -2
Query: 633 LIAFDETIMPVPVCTCTGIARQCYKWGNGGWQSSCCTTTLSVYPLPQLPNKRHARIGGRK 454
L+ FDE MPVP+CTCTG ARQCYKWGNGGWQSSCCTTTLS YPLPQ+PNKRH+R+GGRK
Sbjct: 196 LVTFDEMTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSEYPLPQMPNKRHSRVGGRK 255
Query: 453 MSGSVFHK 430
MSGSVF +
Sbjct: 256 MSGSVFSR 263
>gb|AAM96822.1| hypothetical protein [Arabidopsis thaliana]
Length = 271
Score = 92.4 bits (228), Expect(2) = 8e-30
Identities = 37/70 (52%), Positives = 51/70 (72%)
Frame = -2
Query: 639 LNLIAFDETIMPVPVCTCTGIARQCYKWGNGGWQSSCCTTTLSVYPLPQLPNKRHARIGG 460
+++ +FD + +P PVC+CTG++R CYKWG GGWQSSCCT ++S YPLP + AR+ G
Sbjct: 168 IDISSFDTSGVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGARLAG 227
Query: 459 RKMSGSVFHK 430
RKMS + K
Sbjct: 228 RKMSNGAYVK 237
Score = 60.1 bits (144), Expect(2) = 8e-30
Identities = 24/35 (68%), Positives = 33/35 (93%)
Frame = -3
Query: 431 RLLSKLASEGHDISIPLDLKNYWARHGTNRYITIK 327
+LL++LA EG+D+S PLDLKN+WARHGTN+++TIK
Sbjct: 237 KLLARLADEGYDLSHPLDLKNHWARHGTNKFVTIK 271
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 597,536,394
Number of Sequences: 1393205
Number of extensions: 13621013
Number of successful extensions: 42382
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42366
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
