Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003311A_C01 KMC003311A_c01
(512 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195586.1| hypothetical protein; protein id: At4g38750.1 [... 39 1e-04
gb|AAM46049.1|AC122145_3 Hypothetical protein [Oryza sativa (jap... 28 0.10
ref|NP_297056.1| tetraacyldisaccharide 4`-kinase [Chlamydia muri... 31 7.4
gb|EAA15809.1| hypothetical protein [Plasmodium yoelii yoelii] 31 9.6
>ref|NP_195586.1| hypothetical protein; protein id: At4g38750.1 [Arabidopsis thaliana]
gi|7452057|pir||T06074 hypothetical protein T9A14.30 -
Arabidopsis thaliana gi|4490327|emb|CAB38609.1|
hypothetical protein [Arabidopsis thaliana]
gi|7270857|emb|CAB80538.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1073
Score = 38.5 bits (88), Expect(2) = 1e-04
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = -1
Query: 371 LPFQFVCLQADGVAKRNEEVGFFDVAH 291
L +F+CLQA+GV R EEVG+ D+AH
Sbjct: 937 LLLKFLCLQAEGVVTRAEEVGYVDIAH 963
Score = 28.1 bits (61), Expect(2) = 1e-04
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 6/70 (8%)
Frame = -3
Query: 285 PEVPMSEILHGLQVQQT---SQAC*VYVDKSRIYEMYQVFMFFQLSF*VSF---VCELRI 124
PE+P EILHGLQ Q T ++ C Y K E+ ++ + + +S +C +++
Sbjct: 965 PELPEPEILHGLQDQATAIVAELCDNYKSKEIPDEVKKLCLMLIQTTEMSLYLELCVVQV 1024
Query: 123 MSFHLYYQRI 94
H + R+
Sbjct: 1025 CRIHPVFGRV 1034
>gb|AAM46049.1|AC122145_3 Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 2025
Score = 28.1 bits (61), Expect(2) = 0.10
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -3
Query: 285 PEVPMSEILHGLQVQQTS 232
PE+PM +ILHGLQ Q S
Sbjct: 1873 PELPMPDILHGLQDQVVS 1890
Score = 28.1 bits (61), Expect(2) = 0.10
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 371 LPFQFVCLQADGVAKRNEEVGFFDVAH 291
L +F+C QA +R EE+ F D+AH
Sbjct: 1845 LIMKFLCSQAKEAVRRAEELEFLDLAH 1871
>ref|NP_297056.1| tetraacyldisaccharide 4`-kinase [Chlamydia muridarum]
gi|14423752|sp|Q9PJZ4|LPXK_CHLMU Tetraacyldisaccharide
4'-kinase (Lipid A 4'-kinase) gi|11362702|pir||E81675
tetraacyldisaccharide 4'-kinase TC0682 [imported] -
Chlamydia muridarum (strain Nigg)
gi|7190715|gb|AAF39500.1| tetraacyldisaccharide
4`-kinase [Chlamydia muridarum]
Length = 369
Score = 31.2 bits (69), Expect = 7.4
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -1
Query: 374 HLPFQFVCLQADGVAKRNEEVGFFDVAHVSLRFQCRKSCMDCKCNKLHKPVKCM*IN 204
HLP V +Q D A + G FDV + FQ CN+LHK V+ + +N
Sbjct: 132 HLPAGTVRIQKDRKALAEKSAGAFDVLLLDDGFQ---------CNRLHKDVEIVLVN 179
>gb|EAA15809.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 719
Score = 30.8 bits (68), Expect = 9.6
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 115 ETHNPKLTNERNLKRKLKKHENLIHFIYS*FIYI 216
++H P+ NE+ +K+K +++ NLI + FIYI
Sbjct: 331 KSHAPETINEKEVKKKEERYVNLIDNSFKNFIYI 364
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,196,407
Number of Sequences: 1393205
Number of extensions: 8509633
Number of successful extensions: 17871
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17861
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
