Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003310A_C01 KMC003310A_c01
(611 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175267.1| hypothetical protein; protein id: At1g48330.1 [... 54 2e-06
ref|NP_188385.1| hypothetical protein; protein id: At3g17580.1 [... 54 2e-06
dbj|BAA95851.1| unnamed protein product [Oryza sativa (japonica ... 43 0.003
gb|AAL87176.1|AF480497_4 hypothetical protein [Oryza sativa (jap... 39 0.070
gb|AAN77294.1| Unknown protein [Oryza sativa (japonica cultivar-... 35 0.59
>ref|NP_175267.1| hypothetical protein; protein id: At1g48330.1 [Arabidopsis
thaliana] gi|25405268|pir||D96523 F11A17.11 [imported] -
Arabidopsis thaliana
gi|5733875|gb|AAD49763.1|AC007932_11 F11A17.11
[Arabidopsis thaliana]
Length = 75
Score = 53.9 bits (128), Expect = 2e-06
Identities = 25/39 (64%), Positives = 34/39 (87%)
Frame = -3
Query: 438 QERGVMDLQGEVMACGYEDVQVMWSILDRSKSTSCNMAS 322
++R V +LQG+VMACGYEDV VMWSILD+S S++ N++S
Sbjct: 38 EKRTVQELQGDVMACGYEDVLVMWSILDKSNSSN-NLSS 75
>ref|NP_188385.1| hypothetical protein; protein id: At3g17580.1 [Arabidopsis
thaliana] gi|9294146|dbj|BAB02048.1|
gb|AAD49763.1~gene_id:MKP6.14~similar to unknown protein
[Arabidopsis thaliana]
Length = 80
Score = 53.5 bits (127), Expect = 2e-06
Identities = 25/39 (64%), Positives = 34/39 (87%)
Frame = -3
Query: 438 QERGVMDLQGEVMACGYEDVQVMWSILDRSKSTSCNMAS 322
++R V +LQGEVMACGY+DV VMWSILD+S S++ N++S
Sbjct: 43 EKRMVQELQGEVMACGYDDVLVMWSILDKSNSSN-NLSS 80
>dbj|BAA95851.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|8467933|dbj|BAA96557.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 77
Score = 43.1 bits (100), Expect = 0.003
Identities = 17/24 (70%), Positives = 21/24 (86%)
Frame = -3
Query: 417 LQGEVMACGYEDVQVMWSILDRSK 346
L GEVMAC YEDVQVMW +LD+++
Sbjct: 50 LHGEVMACAYEDVQVMWDMLDKAR 73
>gb|AAL87176.1|AF480497_4 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 92
Score = 38.5 bits (88), Expect = 0.070
Identities = 19/40 (47%), Positives = 24/40 (59%), Gaps = 1/40 (2%)
Frame = -3
Query: 432 RGVM-DLQGEVMACGYEDVQVMWSILDRSKSTSCNMASSS 316
RGV+ L ++ C YEDVQVMW IL RS++ A S
Sbjct: 32 RGVLVKLHDDIQTCAYEDVQVMWEILQRSETARLATAPPS 71
>gb|AAN77294.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 91
Score = 35.4 bits (80), Expect = 0.59
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -3
Query: 447 YAEQERGVMDLQGEVMACGYEDVQVMWSILDRSKS 343
+ ++ G+ L+ EV C YEDV+VMW +L R+ +
Sbjct: 23 FGVRQTGLWRLRQEVSTCEYEDVRVMWEMLSRTST 57
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,859,695
Number of Sequences: 1393205
Number of extensions: 9974652
Number of successful extensions: 20139
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20009
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
