Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003304A_C01 KMC003304A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567115.1| putative protein; protein id: At3g61600.1, supp... 239 1e-62
pir||T47952 hypothetical protein F2A19.200 - Arabidopsis thalian... 239 1e-62
ref|NP_566069.1| expressed protein; protein id: At2g46260.1, sup... 233 2e-60
gb|AAM61110.1| unknown [Arabidopsis thaliana] 233 2e-60
pir||F84900 hypothetical protein At2g46260 [imported] - Arabidop... 233 2e-60
>ref|NP_567115.1| putative protein; protein id: At3g61600.1, supported by cDNA:
gi_12006854 [Arabidopsis thaliana]
gi|12006855|gb|AAG44951.1|AF292397_1 POZ/BTB
containing-protein AtPOB1 [Arabidopsis thaliana]
Length = 561
Score = 239 bits (611), Expect = 1e-62
Identities = 109/124 (87%), Positives = 118/124 (94%)
Frame = -1
Query: 572 REECANLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDY 393
REEC LFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSF VDY
Sbjct: 434 REECGGLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFGVDY 493
Query: 392 EFAARSRPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFLAEDSLYFINGVLHLRAEL 213
EF+ARS+P E+F+SKYKGNYTFTGGKAVGYRNLF +PWTSF+AEDS YFING+LHLRAEL
Sbjct: 494 EFSARSKPAEDFISKYKGNYTFTGGKAVGYRNLFGVPWTSFIAEDSQYFINGILHLRAEL 553
Query: 212 TIRQ 201
TI++
Sbjct: 554 TIKR 557
>pir||T47952 hypothetical protein F2A19.200 - Arabidopsis thaliana
gi|6850851|emb|CAB71090.1| putative protein [Arabidopsis
thaliana]
Length = 545
Score = 239 bits (611), Expect = 1e-62
Identities = 109/124 (87%), Positives = 118/124 (94%)
Frame = -1
Query: 572 REECANLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDY 393
REEC LFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSF VDY
Sbjct: 418 REECGGLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFGVDY 477
Query: 392 EFAARSRPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFLAEDSLYFINGVLHLRAEL 213
EF+ARS+P E+F+SKYKGNYTFTGGKAVGYRNLF +PWTSF+AEDS YFING+LHLRAEL
Sbjct: 478 EFSARSKPAEDFISKYKGNYTFTGGKAVGYRNLFGVPWTSFIAEDSQYFINGILHLRAEL 537
Query: 212 TIRQ 201
TI++
Sbjct: 538 TIKR 541
>ref|NP_566069.1| expressed protein; protein id: At2g46260.1, supported by cDNA:
111153., supported by cDNA: gi_15028122, supported by
cDNA: gi_19310796 [Arabidopsis thaliana]
gi|15028123|gb|AAK76685.1| unknown protein [Arabidopsis
thaliana] gi|19310797|gb|AAL85129.1| unknown protein
[Arabidopsis thaliana] gi|20197378|gb|AAC62880.2|
expressed protein [Arabidopsis thaliana]
Length = 561
Score = 233 bits (593), Expect = 2e-60
Identities = 110/125 (88%), Positives = 118/125 (94%), Gaps = 1/125 (0%)
Frame = -1
Query: 572 REECANLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDY 393
REECA LFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKG+VSF VDY
Sbjct: 432 REECAGLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGAVSFGVDY 491
Query: 392 EFAARSRPT-EEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFLAEDSLYFINGVLHLRAE 216
EFAAR + T EE+VSKYKGNYTFTGGKAVGYRNLF IPWTSF+AEDS +FING+LHLRAE
Sbjct: 492 EFAARDKSTKEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTSFIAEDSQHFINGILHLRAE 551
Query: 215 LTIRQ 201
LTI++
Sbjct: 552 LTIKR 556
>gb|AAM61110.1| unknown [Arabidopsis thaliana]
Length = 546
Score = 233 bits (593), Expect = 2e-60
Identities = 110/125 (88%), Positives = 118/125 (94%), Gaps = 1/125 (0%)
Frame = -1
Query: 572 REECANLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDY 393
REECA LFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKG+VSF VDY
Sbjct: 417 REECAGLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGAVSFGVDY 476
Query: 392 EFAARSRPT-EEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFLAEDSLYFINGVLHLRAE 216
EFAAR + T EE+VSKYKGNYTFTGGKAVGYRNLF IPWTSF+AEDS +FING+LHLRAE
Sbjct: 477 EFAARDKSTKEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTSFIAEDSQHFINGILHLRAE 536
Query: 215 LTIRQ 201
LTI++
Sbjct: 537 LTIKR 541
>pir||F84900 hypothetical protein At2g46260 [imported] - Arabidopsis thaliana
Length = 546
Score = 233 bits (593), Expect = 2e-60
Identities = 110/125 (88%), Positives = 118/125 (94%), Gaps = 1/125 (0%)
Frame = -1
Query: 572 REECANLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDY 393
REECA LFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKG+VSF VDY
Sbjct: 417 REECAGLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGAVSFGVDY 476
Query: 392 EFAARSRPT-EEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFLAEDSLYFINGVLHLRAE 216
EFAAR + T EE+VSKYKGNYTFTGGKAVGYRNLF IPWTSF+AEDS +FING+LHLRAE
Sbjct: 477 EFAARDKSTKEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTSFIAEDSQHFINGILHLRAE 536
Query: 215 LTIRQ 201
LTI++
Sbjct: 537 LTIKR 541
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,516,227
Number of Sequences: 1393205
Number of extensions: 10255010
Number of successful extensions: 32893
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 32270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32879
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
