Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003300A_C01 KMC003300A_c01
(667 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192195.1| putative protein; protein id: At4g02860.1, supp... 149 3e-35
gb|AAM20496.1| putative protein [Arabidopsis thaliana] 149 4e-35
ref|NP_171820.1| unknown protein; protein id: At1g03210.1, suppo... 142 4e-33
ref|NP_192194.1| putative protein; protein id: At4g02850.1 [Arab... 138 8e-32
dbj|BAA88529.1| unnamed protein product [Oryza sativa (japonica ... 135 5e-31
>ref|NP_192195.1| putative protein; protein id: At4g02860.1, supported by cDNA:
gi_20466357 [Arabidopsis thaliana]
gi|25354020|pir||D85036 hypothetical protein AT4g02860
[imported] - Arabidopsis thaliana
gi|4263517|gb|AAD15343.1| similar to PHZF, catalyzing
the hydroxylation of phenazine-1-carboxylic acid to
2-hydroxy-phenazine-1-carboxylic acid [Arabidopsis
thaliana] gi|7269771|emb|CAB77771.1| putative protein
[Arabidopsis thaliana]
Length = 294
Score = 149 bits (376), Expect = 3e-35
Identities = 76/133 (57%), Positives = 94/133 (70%)
Frame = -3
Query: 665 GAPIMI*RVTK*RGLPG*LASREDVIAVQPQLDAMVKFPGRGVIVSAIAPPESGFDFYSR 486
GA I+ + T + L S+E V +QP++D ++K P G+IV+A S +DFYSR
Sbjct: 162 GATIVDIKATATNNILVVLPSKESVTELQPRMDDILKCPCDGIIVTAAGSTGSSYDFYSR 221
Query: 485 FFCPKFGVDEDPVCGTAHCALASYWSKKLGKCDFIANQASPRGGILHIHLDEENPRVFLR 306
+F PKFGVDEDPVCG+AHCALA YWS K+ K DF+A QAS R G + IHLD+E RV LR
Sbjct: 222 YFAPKFGVDEDPVCGSAHCALAHYWSIKMNKFDFLAYQASSRSGTIRIHLDKEKQRVLLR 281
Query: 305 GKAVTVMEGCVLV 267
GKAVTVMEG VLV
Sbjct: 282 GKAVTVMEGHVLV 294
>gb|AAM20496.1| putative protein [Arabidopsis thaliana]
Length = 294
Score = 149 bits (375), Expect = 4e-35
Identities = 72/115 (62%), Positives = 87/115 (75%)
Frame = -3
Query: 611 LASREDVIAVQPQLDAMVKFPGRGVIVSAIAPPESGFDFYSRFFCPKFGVDEDPVCGTAH 432
L S+E V +QP++D ++K P G+IV+A S +DFYSR+F PKFGVDEDPVCG+AH
Sbjct: 180 LPSKESVTELQPRMDDILKCPCDGIIVTAAGSTGSSYDFYSRYFAPKFGVDEDPVCGSAH 239
Query: 431 CALASYWSKKLGKCDFIANQASPRGGILHIHLDEENPRVFLRGKAVTVMEGCVLV 267
CALA YWS K+ K DF+A QAS R G + IHLD+E RV LRGKAVTVMEG VLV
Sbjct: 240 CALAHYWSIKMNKFDFLAYQASSRSGTIRIHLDKEKQRVLLRGKAVTVMEGHVLV 294
>ref|NP_171820.1| unknown protein; protein id: At1g03210.1, supported by cDNA:
gi_12083231 [Arabidopsis thaliana]
gi|25354022|pir||D86163 F15K9.19 protein - Arabidopsis
thaliana gi|3850584|gb|AAC72124.1| ESTs gb|H37641 and
gb|AA651422 come from this gene. [Arabidopsis thaliana]
gi|12083232|gb|AAG48775.1|AF332412_1 unknown protein
[Arabidopsis thaliana]
Length = 286
Score = 142 bits (358), Expect = 4e-33
Identities = 75/133 (56%), Positives = 96/133 (71%)
Frame = -3
Query: 665 GAPIMI*RVTK*RGLPG*LASREDVIAVQPQLDAMVKFPGRGVIVSAIAPPESGFDFYSR 486
GA I+ + TK + L L+S E VI ++P+LD + K P G++V+A A S +DF SR
Sbjct: 155 GATILDVKATK-KDLLVVLSSWEAVIDLKPRLDEISKCPCEGMMVTAAASDGSTYDFCSR 213
Query: 485 FFCPKFGVDEDPVCGTAHCALASYWSKKLGKCDFIANQASPRGGILHIHLDEENPRVFLR 306
+F P+FG++EDPV G+AHCALA YWS ++ KCDF A QAS RGG L +HLD+E RV LR
Sbjct: 214 YFAPRFGINEDPVTGSAHCALAHYWSLRMNKCDFFAYQASSRGGTLKVHLDKEKQRVLLR 273
Query: 305 GKAVTVMEGCVLV 267
GKAVTVMEG VLV
Sbjct: 274 GKAVTVMEGYVLV 286
>ref|NP_192194.1| putative protein; protein id: At4g02850.1 [Arabidopsis thaliana]
gi|25354018|pir||C85036 hypothetical protein AT4g02850
[imported] - Arabidopsis thaliana
gi|4263518|gb|AAD15344.1| similar to PHZF, catalyzing
the hydroxylation of phenazine-1-carboxylic acid to
2-hydroxy-phenazine-1-carboxylic acid [Arabidopsis
thaliana] gi|7269770|emb|CAB77770.1| putative protein
[Arabidopsis thaliana]
Length = 313
Score = 138 bits (347), Expect = 8e-32
Identities = 67/115 (58%), Positives = 84/115 (72%)
Frame = -3
Query: 611 LASREDVIAVQPQLDAMVKFPGRGVIVSAIAPPESGFDFYSRFFCPKFGVDEDPVCGTAH 432
L+S E VI QP++D +VK PG+ +IV+A AP S FDF SR F PK G++ED VCG+AH
Sbjct: 199 LSSWESVIEFQPRVDDIVKCPGKVMIVTAAAPQGSPFDFCSRLFAPKLGLNEDSVCGSAH 258
Query: 431 CALASYWSKKLGKCDFIANQASPRGGILHIHLDEENPRVFLRGKAVTVMEGCVLV 267
C+LA YWS K+ KCDF+A AS R G L +H D+E RV L GKAVTVM+G +LV
Sbjct: 259 CSLAHYWSLKMNKCDFVAFAASQRSGTLKVHYDKEKQRVLLTGKAVTVMKGSILV 313
>dbj|BAA88529.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|6815075|dbj|BAA90362.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 309
Score = 135 bits (340), Expect = 5e-31
Identities = 65/114 (57%), Positives = 83/114 (72%)
Frame = -3
Query: 611 LASREDVIAVQPQLDAMVKFPGRGVIVSAIAPPESGFDFYSRFFCPKFGVDEDPVCGTAH 432
L+S ++V + P ++ + K GRGVIV+ AP S +DF+SRFFCPKFG+DEDPVCG+AH
Sbjct: 195 LSSGKEVADIIPNINEIKKCDGRGVIVTGPAPAGSDYDFFSRFFCPKFGIDEDPVCGSAH 254
Query: 431 CALASYWSKKLGKCDFIANQASPRGGILHIHLDEENPRVFLRGKAVTVMEGCVL 270
C LA YW KLGK A QASPR G L++ LD EN RV ++G+AVTVM G +L
Sbjct: 255 CVLAPYWGGKLGKQKLTAFQASPRSGTLYLELDGENRRVRIQGEAVTVMAGTLL 308
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,555,773
Number of Sequences: 1393205
Number of extensions: 13663995
Number of successful extensions: 29009
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 27997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28987
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
