Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003296A_C01 KMC003296A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191363.1| putative protein; protein id: At3g58040.1, supp... 242 2e-63
pir||T50562 SINA2 protein [imported] - Vitis vinifera gi|4584257... 238 4e-62
ref|NP_181729.1| putative RING zinc finger protein; protein id: ... 235 2e-61
dbj|BAA96602.1| unnamed protein product [Oryza sativa (japonica ... 224 6e-58
dbj|BAC15488.1| similar to RING zinc finger protein [Oryza sativ... 223 1e-57
>ref|NP_191363.1| putative protein; protein id: At3g58040.1, supported by cDNA:
38296. [Arabidopsis thaliana] gi|11291750|pir||T46026
hypothetical protein T10K17.250 - Arabidopsis thaliana
gi|6729547|emb|CAB67632.1| putative protein [Arabidopsis
thaliana] gi|21593355|gb|AAM65304.1| putative RING zinc
finger protein [Arabidopsis thaliana]
Length = 308
Score = 242 bits (618), Expect = 2e-63
Identities = 113/125 (90%), Positives = 120/125 (95%)
Frame = -3
Query: 530 HRYVKSNPHEVENATWMLTIFNSFGRHFCLHFEAFQIGTAPVYMAFLRFMGEDSEAKKFS 351
HRYVKSNPHEVENATWMLT+FN FGR FCLHFEAFQ+G APVYMAFLRFMG+++EAKKFS
Sbjct: 184 HRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFS 243
Query: 350 YSLEVGANGRKLTWQGIPRSIRDSHRKVRDSQDGLIIQRNLGLYFSGGDRQELKLRITGR 171
YSLEVGA+GRKLTWQGIPRSIRDSHRKVRDSQDGLII RNL LYFSGGDRQELKLR+TGR
Sbjct: 244 YSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRVTGR 303
Query: 170 IWKEE 156
IWKEE
Sbjct: 304 IWKEE 308
>pir||T50562 SINA2 protein [imported] - Vitis vinifera
gi|4584257|emb|CAB40578.1| SINA2p [Vitis vinifera]
Length = 315
Score = 238 bits (606), Expect = 4e-62
Identities = 110/124 (88%), Positives = 117/124 (93%)
Frame = -3
Query: 530 HRYVKSNPHEVENATWMLTIFNSFGRHFCLHFEAFQIGTAPVYMAFLRFMGEDSEAKKFS 351
HRYVKSNP EVENATWMLT+FN FG+ FCLHFEAFQ+GTAPVYMAFLRFMG+D+EAKKFS
Sbjct: 183 HRYVKSNPQEVENATWMLTVFNCFGKQFCLHFEAFQLGTAPVYMAFLRFMGDDNEAKKFS 242
Query: 350 YSLEVGANGRKLTWQGIPRSIRDSHRKVRDSQDGLIIQRNLGLYFSGGDRQELKLRITGR 171
YSLEVG N RKL WQG+PRSIRDSHRKVRDSQDGLIIQRNL LYFSGGDRQELKLR+TGR
Sbjct: 243 YSLEVGGNSRKLIWQGVPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQELKLRVTGR 302
Query: 170 IWKE 159
IWKE
Sbjct: 303 IWKE 306
>ref|NP_181729.1| putative RING zinc finger protein; protein id: At2g41980.1
[Arabidopsis thaliana] gi|25366637|pir||E84848 probable
RING zinc finger protein [imported] - Arabidopsis
thaliana gi|1871185|gb|AAB63545.1| putative RING zinc
finger protein; tRNA-Ser [Arabidopsis thaliana]
Length = 305
Score = 235 bits (600), Expect = 2e-61
Identities = 109/125 (87%), Positives = 118/125 (94%)
Frame = -3
Query: 530 HRYVKSNPHEVENATWMLTIFNSFGRHFCLHFEAFQIGTAPVYMAFLRFMGEDSEAKKFS 351
HRYVKSNPHEVENATWMLT+FN FGR FCLHFEAFQ+G APVYMAFLRFMG+++EAKKFS
Sbjct: 181 HRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFS 240
Query: 350 YSLEVGANGRKLTWQGIPRSIRDSHRKVRDSQDGLIIQRNLGLYFSGGDRQELKLRITGR 171
YSLEVGA+ RKLTWQGIPRSIRDSHRKVRDSQDGLII RNL LYFSG D++ELKLR+TGR
Sbjct: 241 YSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVTGR 300
Query: 170 IWKEE 156
IWKEE
Sbjct: 301 IWKEE 305
>dbj|BAA96602.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 381
Score = 224 bits (570), Expect = 6e-58
Identities = 100/125 (80%), Positives = 117/125 (93%)
Frame = -3
Query: 530 HRYVKSNPHEVENATWMLTIFNSFGRHFCLHFEAFQIGTAPVYMAFLRFMGEDSEAKKFS 351
HRYVKSNP EVENATWMLT+F+ FG++FCLHFEAFQ+G APVYMAFLRFMG+++EA+ +S
Sbjct: 244 HRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYS 303
Query: 350 YSLEVGANGRKLTWQGIPRSIRDSHRKVRDSQDGLIIQRNLGLYFSGGDRQELKLRITGR 171
YSLEVGANGRK+ W+G PRS+RDSHRKVRDS DGLIIQRN+ L+FSGGDR+ELKLRITGR
Sbjct: 304 YSLEVGANGRKMVWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRITGR 363
Query: 170 IWKEE 156
IWKE+
Sbjct: 364 IWKEQ 368
>dbj|BAC15488.1| similar to RING zinc finger protein [Oryza sativa (japonica
cultivar-group)] gi|29126067|dbj|BAC16053.2| similar to
RING zinc finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 333
Score = 223 bits (568), Expect = 1e-57
Identities = 101/126 (80%), Positives = 119/126 (94%), Gaps = 1/126 (0%)
Frame = -3
Query: 530 HRYVKSNPHEVENATWMLTI-FNSFGRHFCLHFEAFQIGTAPVYMAFLRFMGEDSEAKKF 354
HRYVKSNPHEVENATWMLT+ F+ FG++FCLHFEAFQ+G APVY+AFLRFMG+D+EAK +
Sbjct: 208 HRYVKSNPHEVENATWMLTVVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDAEAKNY 267
Query: 353 SYSLEVGANGRKLTWQGIPRSIRDSHRKVRDSQDGLIIQRNLGLYFSGGDRQELKLRITG 174
SYSLEVG +GRK+TWQG+PRSIRDSHRKVRDS DGLIIQRN+ L+FSGGD++ELKLR+TG
Sbjct: 268 SYSLEVGGSGRKMTWQGVPRSIRDSHRKVRDSYDGLIIQRNMALFFSGGDKKELKLRVTG 327
Query: 173 RIWKEE 156
RIWKE+
Sbjct: 328 RIWKEQ 333
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,127,605
Number of Sequences: 1393205
Number of extensions: 9922066
Number of successful extensions: 22224
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 21723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22215
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
