Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003295A_C01 KMC003295A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187568.1| unknown protein; protein id: At3g09570.1 [Arabi... 79 2e-14
dbj|BAB89751.1| P0506B12.23 [Oryza sativa (japonica cultivar-gro... 74 9e-13
ref|NP_197353.1| putative protein; protein id: At5g18520.1 [Arab... 70 2e-11
ref|NP_199024.1| putative protein; protein id: At5g42090.1, supp... 50 2e-05
dbj|BAA84809.1| ESTs AU078277(S1084),AU078273(S13585), D47857(S1... 49 4e-05
>ref|NP_187568.1| unknown protein; protein id: At3g09570.1 [Arabidopsis thaliana]
gi|7417736|gb|AAF62563.1| unknown protein [Arabidopsis
thaliana] gi|27311853|gb|AAO00892.1| unknown protein
[Arabidopsis thaliana]
Length = 439
Score = 79.3 bits (194), Expect = 2e-14
Identities = 36/43 (83%), Positives = 43/43 (99%)
Frame = -2
Query: 473 ASLAFYVVMFYMFQPVEKNEYFVLDEEEEEAAELALREEEFEL 345
ASLAFY++MFYMF+PVEKNEYFV+DEEEEEAAELAL+E++FEL
Sbjct: 397 ASLAFYMLMFYMFRPVEKNEYFVIDEEEEEAAELALKEDDFEL 439
>dbj|BAB89751.1| P0506B12.23 [Oryza sativa (japonica cultivar-group)]
Length = 449
Score = 73.9 bits (180), Expect = 9e-13
Identities = 33/43 (76%), Positives = 40/43 (92%)
Frame = -2
Query: 473 ASLAFYVVMFYMFQPVEKNEYFVLDEEEEEAAELALREEEFEL 345
A++AFY+ MFYMF+P E+N+YF LDE+EEEAAELALREEEFEL
Sbjct: 407 ATVAFYLFMFYMFRPAERNQYFALDEDEEEAAELALREEEFEL 449
>ref|NP_197353.1| putative protein; protein id: At5g18520.1 [Arabidopsis thaliana]
Length = 440
Score = 69.7 bits (169), Expect = 2e-11
Identities = 31/42 (73%), Positives = 38/42 (89%)
Frame = -2
Query: 470 SLAFYVVMFYMFQPVEKNEYFVLDEEEEEAAELALREEEFEL 345
SL FYV+MF+MF+P EKNEYF +D++EEEAA LALR+EEFEL
Sbjct: 399 SLVFYVIMFHMFRPEEKNEYFAVDDDEEEAAALALRDEEFEL 440
>ref|NP_199024.1| putative protein; protein id: At5g42090.1, supported by cDNA:
27758., supported by cDNA: gi_16648952, supported by
cDNA: gi_20259829 [Arabidopsis thaliana]
gi|9757954|dbj|BAB08442.1|
dbj|BAA84809.1~gene_id:MJC20.20~similar to unknown
protein [Arabidopsis thaliana]
gi|16648953|gb|AAL24328.1| Unknown protein [Arabidopsis
thaliana] gi|20259830|gb|AAM13262.1| unknown protein
[Arabidopsis thaliana]
Length = 439
Score = 49.7 bits (117), Expect = 2e-05
Identities = 26/44 (59%), Positives = 33/44 (74%), Gaps = 1/44 (2%)
Frame = -2
Query: 473 ASLAFYVVMFYMFQPVEKNEYFVLDEEEEEAAELALR-EEEFEL 345
A+LAFY+ Y F+P N YFV+D+EEEEAA AL+ E+EFEL
Sbjct: 396 ATLAFYLFTGYKFRPEVHNPYFVVDDEEEEAAAEALKLEDEFEL 439
>dbj|BAA84809.1| ESTs AU078277(S1084),AU078273(S13585), D47857(S13585) correspond to
a region of the predicted gene.~Similar to
Caenorhabditis elegans cosmid C15H9; hypothetical
protein (U56965) [Oryza sativa (japonica
cultivar-group)] gi|11875158|dbj|BAB19371.1| contains
ESTs
AU078277(S1084),AU078273(S13585),D47857(S13585)~unknown
protein [Oryza sativa (japonica cultivar-group)]
gi|28190667|gb|AAO33145.1| unknown [Oryza sativa
(japonica cultivar-group)]
Length = 454
Score = 48.5 bits (114), Expect = 4e-05
Identities = 25/44 (56%), Positives = 32/44 (71%), Gaps = 1/44 (2%)
Frame = -2
Query: 473 ASLAFYVVMFYMFQPVEKNEYFVLDEEEEEAAELALR-EEEFEL 345
A+LAFYV Y F+P N YF +D+EEEEAA AL+ ++EFEL
Sbjct: 411 ATLAFYVFTGYKFRPEVHNPYFAIDDEEEEAAAEALKLDDEFEL 454
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396,066,032
Number of Sequences: 1393205
Number of extensions: 7901599
Number of successful extensions: 62251
Number of sequences better than 10.0: 262
Number of HSP's better than 10.0 without gapping: 35010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50842
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
