Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003293A_C01 KMC003293A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182061.1| hypothetical protein; protein id: At2g45360.1 [... 100 2e-20
ref|NP_191637.1| putative protein; protein id: At3g60780.1, supp... 97 8e-20
ref|NP_176472.1| hypothetical protein; protein id: At1g62840.1 [... 70 1e-11
ref|NP_172696.1| hypothetical protein; protein id: At1g12320.1, ... 56 2e-07
ref|XP_210885.1| hypothetical protein XP_210885 [Homo sapiens] 34 0.88
>ref|NP_182061.1| hypothetical protein; protein id: At2g45360.1 [Arabidopsis
thaliana] gi|25344262|pir||F84889 hypothetical protein
At2g45360 [imported] - Arabidopsis thaliana
gi|2583118|gb|AAB82627.1| hypothetical protein
[Arabidopsis thaliana] gi|26451827|dbj|BAC43006.1|
unknown protein [Arabidopsis thaliana]
gi|28950747|gb|AAO63297.1| At2g45360 [Arabidopsis
thaliana]
Length = 215
Score = 99.8 bits (247), Expect = 2e-20
Identities = 53/91 (58%), Positives = 63/91 (68%)
Frame = -3
Query: 516 LRVAKLSSMGAVLVCKNANSRNVTGFKWRSVVDGGSSRRRLVHSVFLPVGKGLDIAHVSA 337
LR AKLS+ GAVLVCKNA R ++GFKW V+ G+ R+V SVFLPVG GLDI HV A
Sbjct: 130 LRFAKLSNKGAVLVCKNAMHRAISGFKWHDVLKRGT---RVVRSVFLPVGSGLDIVHVGA 186
Query: 336 VGGGDSVSGIKGKRWIKHVDRQSGDVHVIRR 244
G GDS + RWI+HVD SG+ H+ RR
Sbjct: 187 TGRGDSRN--LRSRWIRHVDHLSGEEHLFRR 215
>ref|NP_191637.1| putative protein; protein id: At3g60780.1, supported by cDNA:
266001. [Arabidopsis thaliana] gi|11281198|pir||T47889
hypothetical protein T4C21.190 - Arabidopsis thaliana
gi|7329688|emb|CAB82682.1| putative protein [Arabidopsis
thaliana] gi|21554853|gb|AAM63709.1| unknown
[Arabidopsis thaliana]
Length = 218
Score = 97.4 bits (241), Expect = 8e-20
Identities = 48/91 (52%), Positives = 66/91 (71%)
Frame = -3
Query: 516 LRVAKLSSMGAVLVCKNANSRNVTGFKWRSVVDGGSSRRRLVHSVFLPVGKGLDIAHVSA 337
L +AK S MGAVLVCKNA +++ GFKW+ ++ G+ R+V SVFLPVG+GL+I HV A
Sbjct: 132 LGLAKTSKMGAVLVCKNATLKSIPGFKWQGLLRRGT---RVVRSVFLPVGRGLEIVHVGA 188
Query: 336 VGGGDSVSGIKGKRWIKHVDRQSGDVHVIRR 244
GGG+ + I RWIKH+D +SG+ H+ +R
Sbjct: 189 SGGGNGLRKIP-SRWIKHIDPRSGEEHLFKR 218
>ref|NP_176472.1| hypothetical protein; protein id: At1g62840.1 [Arabidopsis
thaliana] gi|25344260|pir||A96653 protein F23N19.19
[imported] - Arabidopsis thaliana
gi|6630452|gb|AAF19540.1|AC007190_8 F23N19.19
[Arabidopsis thaliana]
Length = 224
Score = 70.5 bits (171), Expect = 1e-11
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Frame = -3
Query: 516 LRVAKLSSMGAVLVCKNANSRNVTGFKWRSVVDGGSSRRRLVHSVFLPVGKGLDIAHVSA 337
LR A S GAV+VC++ R+ + F W S R +V +V LPV GL+IAHV+A
Sbjct: 137 LRNAVFGSRGAVVVCRSGYRRSTSCFSWTKAF----SDRNVVRTVTLPVSGGLEIAHVAA 192
Query: 336 V-GGGDSVSGIKGKRWIKHVDRQSGDVHVIRR 244
G S + ++WIKH D++SG+ HVIR+
Sbjct: 193 ARSSGKSDNNSNKRKWIKHFDQRSGEEHVIRK 224
>ref|NP_172696.1| hypothetical protein; protein id: At1g12320.1, supported by cDNA:
gi_17380647 [Arabidopsis thaliana]
gi|8778621|gb|AAF79629.1|AC025416_3 F5O11.5 [Arabidopsis
thaliana] gi|17380648|gb|AAL36154.1| unknown protein
[Arabidopsis thaliana] gi|21436269|gb|AAM51273.1|
unknown protein [Arabidopsis thaliana]
Length = 212
Score = 56.2 bits (134), Expect = 2e-07
Identities = 36/88 (40%), Positives = 51/88 (57%)
Frame = -3
Query: 516 LRVAKLSSMGAVLVCKNANSRNVTGFKWRSVVDGGSSRRRLVHSVFLPVGKGLDIAHVSA 337
L+ A + GAV+VC+N S R V+ R++V +V LPV G++IAHV+A
Sbjct: 134 LKNAAFGNRGAVVVCRNGYS------SLRRVLRD----RKVVRTVTLPVTGGIEIAHVAA 183
Query: 336 VGGGDSVSGIKGKRWIKHVDRQSGDVHV 253
G S G +RWI HVD++SG+ HV
Sbjct: 184 RNSGKS--GNNKRRWITHVDQRSGEEHV 209
>ref|XP_210885.1| hypothetical protein XP_210885 [Homo sapiens]
Length = 129
Score = 34.3 bits (77), Expect = 0.88
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 233 CLMQAACFFFFFFLCWYSISCKDCNRFYLTSSFL*HVLP 117
C MQ C FF +LCW + + NRF S F H+LP
Sbjct: 72 CQMQWKCIDFFSYLCW--LQSINLNRFSKVSFFCMHLLP 108
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,615,465
Number of Sequences: 1393205
Number of extensions: 10882196
Number of successful extensions: 37049
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 34093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36793
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
