Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003290A_C01 KMC003290A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568525.1| putative protein; protein id: At5g35080.1, supp... 46 3e-04
gb|AAM64343.1| unknown [Arabidopsis thaliana] 42 0.003
ref|NP_039199.1| ORF FPV236 N1R/p28 gene family protein [Fowlpox... 33 2.1
dbj|BAA00448.1| open reading frame (196 AA) [Mus musculus] 33 2.7
dbj|BAA96170.1| unnamed protein product [Oryza sativa (japonica ... 32 4.6
>ref|NP_568525.1| putative protein; protein id: At5g35080.1, supported by cDNA:
232091. [Arabidopsis thaliana]
gi|26452701|dbj|BAC43433.1| unknown protein [Arabidopsis
thaliana]
Length = 282
Score = 45.8 bits (107), Expect = 3e-04
Identities = 21/39 (53%), Positives = 28/39 (70%)
Frame = -1
Query: 529 LCKHPLFQEERPVWHTIDCNVLPKDYKDAKGRQENRDVE 413
LCKHPLFQ E+PV HTI CN +P + +DA +E + V+
Sbjct: 236 LCKHPLFQLEKPVSHTIHCNAIPVE-EDATRNKEEQAVD 273
>gb|AAM64343.1| unknown [Arabidopsis thaliana]
Length = 282
Score = 42.4 bits (98), Expect = 0.003
Identities = 20/39 (51%), Positives = 27/39 (68%)
Frame = -1
Query: 529 LCKHPLFQEERPVWHTIDCNVLPKDYKDAKGRQENRDVE 413
LCKH LFQ E+PV HTI CN +P + +DA +E + V+
Sbjct: 236 LCKHXLFQLEKPVSHTIHCNAIPVE-EDATRNKEEQAVD 273
>ref|NP_039199.1| ORF FPV236 N1R/p28 gene family protein [Fowlpox virus]
gi|140240|sp|P14365|V236_FOWPV Protein FPV236
(BamHI-ORF10) gi|74282|pir||WMVZFT BamHI-ORF10 protein -
fowlpox virus (isolate HP-438[Munich])
gi|221396|dbj|BAA00205.1| ORF 10 [Fowlpox virus]
gi|7271734|gb|AAF44580.1|AF198100_227 ORF FPV236 N1R/p28
gene family protein [Fowlpox virus]
Length = 280
Score = 33.1 bits (74), Expect = 2.1
Identities = 14/53 (26%), Positives = 32/53 (59%)
Frame = -1
Query: 475 CNVLPKDYKDAKGRQENRDVEIVMVTDNEINDPEQ*CEYTQLRMEGEKIEQVV 317
CN+ KD+ D K + +R + + +N+++DP +T++++ GE + Q++
Sbjct: 52 CNLEGKDFNDWKQLESSRRLLNTLKDNNKLHDPIINIRHTRIKINGEYVSQLL 104
>dbj|BAA00448.1| open reading frame (196 AA) [Mus musculus]
Length = 196
Score = 32.7 bits (73), Expect = 2.7
Identities = 20/65 (30%), Positives = 31/65 (46%)
Frame = +3
Query: 249 HIPRFHASEYVHLLFFRSRKHMLTTCSIFSPSILSCVYSHHCSGSLISLSVTITISTSLF 428
H+ +H S Y H+L S HM SI+ SI C+Y +S+ V + I ++
Sbjct: 129 HMSVYHPSTY-HMLSISSTYHMSVYSSIYLSSIYLCIYH-------LSVCVCVCIYVCMY 180
Query: 429 SCLPL 443
C+ L
Sbjct: 181 VCICL 185
>dbj|BAA96170.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 668
Score = 32.0 bits (71), Expect = 4.6
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Frame = +3
Query: 165 AIGLCLLGQLYV--WQNYI*QRMHCTSNDSHIPRF-----------HASEYVHLLFFRSR 305
A+GL LLG + + + +H SN SHIP F ++SE V + F SR
Sbjct: 515 AVGLLLLGSAIAAAFADPLVDAVHNFSNASHIPSFFISFIALPLATNSSEAVSAIIFASR 574
Query: 306 KHMLTTCSIFS 338
K + T+ FS
Sbjct: 575 KKLRTSSLTFS 585
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,464,579
Number of Sequences: 1393205
Number of extensions: 9974099
Number of successful extensions: 24182
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 23625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24178
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
