Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003289A_C01 KMC003289A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194960.1| putative protein; protein id: At4g32340.1, supp... 49 5e-05
gb|AAK64165.1| unknown protein [Arabidopsis thaliana] 49 5e-05
gb|AAL67600.1|AC018929_22 unknown protein [Oryza sativa] 49 5e-05
ref|NP_565230.1| expressed protein; protein id: At1g80130.1, sup... 48 9e-05
pir||T05080 hypothetical protein T6K21.120 - Arabidopsis thalian... 47 2e-04
>ref|NP_194960.1| putative protein; protein id: At4g32340.1, supported by cDNA:
34819., supported by cDNA: gi_14532727 [Arabidopsis
thaliana] gi|7486637|pir||T05344 hypothetical protein
F8B4.40 - Arabidopsis thaliana
gi|2864610|emb|CAA16957.1| putative protein [Arabidopsis
thaliana] gi|4049336|emb|CAA22561.1| putative protein
[Arabidopsis thaliana] gi|7270138|emb|CAB79951.1|
putative protein [Arabidopsis thaliana]
gi|21592985|gb|AAM64934.1| unknown [Arabidopsis
thaliana] gi|23297278|gb|AAN12931.1| unknown protein
[Arabidopsis thaliana]
Length = 238
Score = 48.5 bits (114), Expect = 5e-05
Identities = 22/36 (61%), Positives = 29/36 (80%), Gaps = 2/36 (5%)
Frame = -3
Query: 540 AVKSAPDDCYVLASYAKFLWDIED--EDKDSHHKTD 439
AV+S+PDDC VLASYA+FLWD E+ E+++S H D
Sbjct: 188 AVQSSPDDCNVLASYARFLWDAEEEVEEEESKHHED 223
>gb|AAK64165.1| unknown protein [Arabidopsis thaliana]
Length = 238
Score = 48.5 bits (114), Expect = 5e-05
Identities = 22/36 (61%), Positives = 29/36 (80%), Gaps = 2/36 (5%)
Frame = -3
Query: 540 AVKSAPDDCYVLASYAKFLWDIED--EDKDSHHKTD 439
AV+S+PDDC VLASYA+FLWD E+ E+++S H D
Sbjct: 188 AVQSSPDDCNVLASYARFLWDAEEEVEEEESKHHED 223
>gb|AAL67600.1|AC018929_22 unknown protein [Oryza sativa]
Length = 227
Score = 48.5 bits (114), Expect = 5e-05
Identities = 19/28 (67%), Positives = 24/28 (84%)
Frame = -3
Query: 540 AVKSAPDDCYVLASYAKFLWDIEDEDKD 457
AV++APDDCYVL SYA FLWD E+++ D
Sbjct: 185 AVQAAPDDCYVLGSYASFLWDAEEDEDD 212
>ref|NP_565230.1| expressed protein; protein id: At1g80130.1, supported by cDNA:
35675., supported by cDNA: gi_14334635, supported by
cDNA: gi_17104606 [Arabidopsis thaliana]
gi|25406635|pir||H96832 hypothetical protein F18B13.21
[imported] - Arabidopsis thaliana
gi|5902369|gb|AAD55471.1|AC009322_11 Unknown protein
[Arabidopsis thaliana] gi|14334636|gb|AAK59496.1|
unknown protein [Arabidopsis thaliana]
gi|17104607|gb|AAL34192.1| unknown protein [Arabidopsis
thaliana] gi|21593053|gb|AAM65002.1| unknown
[Arabidopsis thaliana]
Length = 305
Score = 47.8 bits (112), Expect = 9e-05
Identities = 17/28 (60%), Positives = 26/28 (92%)
Frame = -3
Query: 540 AVKSAPDDCYVLASYAKFLWDIEDEDKD 457
AVK +P+DCYV ASYA+FLWD++++++D
Sbjct: 242 AVKMSPEDCYVQASYARFLWDVDEDEED 269
>pir||T05080 hypothetical protein T6K21.120 - Arabidopsis thaliana
gi|2894603|emb|CAA17137.1| putative protein [Arabidopsis
thaliana] gi|7268546|emb|CAB78796.1| putative protein
[Arabidopsis thaliana]
Length = 248
Score = 47.0 bits (110), Expect = 2e-04
Identities = 18/43 (41%), Positives = 29/43 (66%)
Frame = -3
Query: 540 AVKSAPDDCYVLASYAKFLWDIEDEDKDSHHKTDQSYTYPSDL 412
AV ++P+DC VL SYA+F+W+ ED+D D + ++ + S L
Sbjct: 201 AVNASPNDCMVLGSYARFMWEAEDDDDDDEEEEEEEWMAASPL 243
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,262,917
Number of Sequences: 1393205
Number of extensions: 8990124
Number of successful extensions: 19268
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 18781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19259
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
