Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003286A_C01 KMC003286A_c01
(668 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181528.1| 26S proteasome regulatory subunit; protein id: ... 161 6e-39
gb|AAL32634.1| 26S proteasome regulatory subunit [Arabidopsis th... 159 2e-38
gb|AAL15890.1|AF417302_1 26S proteasome regulatory subunit S12 i... 137 1e-31
dbj|BAC40412.1| unnamed protein product [Mus musculus] 66 4e-10
ref|NP_079620.1| eukaryotic translation initiation factor 3, sub... 66 4e-10
>ref|NP_181528.1| 26S proteasome regulatory subunit; protein id: At2g39990.1,
supported by cDNA: gi_15027934, supported by cDNA:
gi_17064959, supported by cDNA: gi_20259172, supported
by cDNA: gi_20260039, supported by cDNA: gi_2351375
[Arabidopsis thaliana] gi|23396614|sp|O04202|IF35_ARATH
Eukaryotic translation initiation factor 3 subunit 5
(eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
gi|25408655|pir||H84823 26S proteasome regulatory
subunit [imported] - Arabidopsis thaliana
gi|2088652|gb|AAB95284.1| 26S proteasome regulatory
subunit [Arabidopsis thaliana] gi|2351376|gb|AAD03463.1|
translation initiation factor eIF2 p47 subunit homolog
[Arabidopsis thaliana] gi|15027935|gb|AAK76498.1|
putative 26S proteasome regulatory subunit [Arabidopsis
thaliana] gi|20259173|gb|AAM14302.1| putative 26S
proteasome regulatory subunit [Arabidopsis thaliana]
Length = 293
Score = 161 bits (408), Expect = 6e-39
Identities = 81/103 (78%), Positives = 92/103 (88%)
Frame = -3
Query: 666 ATTVEKIPSDLEGMEASMEHLLALIDDIYKYVDDVVEGRIAPDNNIGKFISDAVGSLPKS 487
AT+V+K+P+DLEGME +ME LL LI+D+YKYVD VV G+IAPDNNIG+FI+DAV SLPK
Sbjct: 191 ATSVDKLPNDLEGMELTMERLLTLINDVYKYVDSVVGGQIAPDNNIGRFIADAVASLPKL 250
Query: 486 PPAVFDKLVNDSLQDHLLSLYLSSITRTQLSLAEKLNTAAQIL 358
PP VFD LVNDSLQD LL LYLSSITRTQLSLAEKLNTAAQ+L
Sbjct: 251 PPQVFDNLVNDSLQDQLLLLYLSSITRTQLSLAEKLNTAAQML 293
>gb|AAL32634.1| 26S proteasome regulatory subunit [Arabidopsis thaliana]
gi|20260040|gb|AAM13367.1| 26S proteasome regulatory
subunit [Arabidopsis thaliana]
Length = 293
Score = 159 bits (403), Expect = 2e-38
Identities = 80/103 (77%), Positives = 92/103 (88%)
Frame = -3
Query: 666 ATTVEKIPSDLEGMEASMEHLLALIDDIYKYVDDVVEGRIAPDNNIGKFISDAVGSLPKS 487
AT+V+K+P+DLEGME +ME LL LI+D+YKYVD VV G+IAPDNNIG+FI+DAV SLPK
Sbjct: 191 ATSVDKLPNDLEGMELTMERLLTLINDVYKYVDSVVGGQIAPDNNIGRFIADAVASLPKL 250
Query: 486 PPAVFDKLVNDSLQDHLLSLYLSSITRTQLSLAEKLNTAAQIL 358
PP VFD LVN+SLQD LL LYLSSITRTQLSLAEKLNTAAQ+L
Sbjct: 251 PPQVFDNLVNNSLQDQLLLLYLSSITRTQLSLAEKLNTAAQML 293
>gb|AAL15890.1|AF417302_1 26S proteasome regulatory subunit S12 isolog-like protein [Castanea
sativa]
Length = 197
Score = 137 bits (345), Expect = 1e-31
Identities = 67/87 (77%), Positives = 77/87 (88%)
Frame = -3
Query: 663 TTVEKIPSDLEGMEASMEHLLALIDDIYKYVDDVVEGRIAPDNNIGKFISDAVGSLPKSP 484
T V+K+P+DLEGMEASME LLALIDD+YKYVD+VVEG +APDN+IG+FIS+ V SLPK
Sbjct: 108 TMVDKLPNDLEGMEASMERLLALIDDVYKYVDNVVEGHVAPDNSIGRFISETVSSLPKLS 167
Query: 483 PAVFDKLVNDSLQDHLLSLYLSSITRT 403
P FDKLVNDSLQD+LL LYLSSITRT
Sbjct: 168 PPAFDKLVNDSLQDNLLLLYLSSITRT 194
>dbj|BAC40412.1| unnamed protein product [Mus musculus]
Length = 361
Score = 66.2 bits (160), Expect = 4e-10
Identities = 27/90 (30%), Positives = 57/90 (63%)
Frame = -3
Query: 648 IPSDLEGMEASMEHLLALIDDIYKYVDDVVEGRIAPDNNIGKFISDAVGSLPKSPPAVFD 469
+ SDL+ + + + + + +Y +DV+ G+++ DN +G+F+ V +PK P F+
Sbjct: 269 LSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFE 328
Query: 468 KLVNDSLQDHLLSLYLSSITRTQLSLAEKL 379
++N ++ D L+ YL+++T++Q++L EKL
Sbjct: 329 TMLNSNINDLLMVTYLANLTQSQIALNEKL 358
>ref|NP_079620.1| eukaryotic translation initiation factor 3, subunit 5 (epsilon)
[Mus musculus] gi|23396621|sp|Q9DCH4|IF35_MOUSE
Eukaryotic translation initiation factor 3 subunit 5
(eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f)
gi|12833012|dbj|BAB22352.1| unnamed protein product [Mus
musculus]
Length = 361
Score = 66.2 bits (160), Expect = 4e-10
Identities = 27/90 (30%), Positives = 57/90 (63%)
Frame = -3
Query: 648 IPSDLEGMEASMEHLLALIDDIYKYVDDVVEGRIAPDNNIGKFISDAVGSLPKSPPAVFD 469
+ SDL+ + + + + + +Y +DV+ G+++ DN +G+F+ V +PK P F+
Sbjct: 269 LSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFE 328
Query: 468 KLVNDSLQDHLLSLYLSSITRTQLSLAEKL 379
++N ++ D L+ YL+++T++Q++L EKL
Sbjct: 329 TMLNSNINDLLMVTYLANLTQSQIALNEKL 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,742,717
Number of Sequences: 1393205
Number of extensions: 10610789
Number of successful extensions: 27338
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 26526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27323
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
