Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003282A_C01 KMC003282A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO60031.1| unknown protein, 5'-partial [Oryza sativa (japoni... 132 5e-30
dbj|BAC42103.1| unknown protein [Arabidopsis thaliana] 129 3e-29
ref|NP_187474.1| KH domain protein; protein id: At3g08620.1 [Ara... 129 3e-29
dbj|BAC21599.1| contains EST C27129(C51039)~similar to RNA-bindi... 127 1e-28
dbj|BAB62585.1| P0454H12.18 [Oryza sativa (japonica cultivar-gro... 119 3e-26
>gb|AAO60031.1| unknown protein, 5'-partial [Oryza sativa (japonica
cultivar-group)]
Length = 95
Score = 132 bits (331), Expect = 5e-30
Identities = 66/88 (75%), Positives = 74/88 (84%)
Frame = -3
Query: 613 GYEHXSEPLHILIEAELPAXIVDVRLRQAQEIIEEILKPVDESQDFYKRQQLRERAMLNS 434
GYEH S+PLHILIEAE PA I+D RLR AQE+IEE+LKPVDESQDFYKRQQLRE AMLNS
Sbjct: 9 GYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDFYKRQQLRELAMLNS 68
Query: 433 NFREESPQLSGSVSPFTSNEIKRAKTDQ 350
RE+SP GSVSPF++ +KRAKT Q
Sbjct: 69 TLREDSPH-PGSVSPFSNGGMKRAKTGQ 95
>dbj|BAC42103.1| unknown protein [Arabidopsis thaliana]
Length = 283
Score = 129 bits (324), Expect = 3e-29
Identities = 64/86 (74%), Positives = 73/86 (84%)
Frame = -3
Query: 613 GYEHXSEPLHILIEAELPAXIVDVRLRQAQEIIEEILKPVDESQDFYKRQQLRERAMLNS 434
GYEH +E LHILIEA+LP IVD++LRQAQEIIEE++KPVDESQD+ KRQQLRE A+LNS
Sbjct: 196 GYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQDYIKRQQLRELALLNS 255
Query: 433 NFREESPQLSGSVSPFTSNEIKRAKT 356
N RE SP SGSVSPF SN +KR KT
Sbjct: 256 NLRENSPGPSGSVSPFNSNAMKRPKT 281
>ref|NP_187474.1| KH domain protein; protein id: At3g08620.1 [Arabidopsis thaliana]
gi|12322716|gb|AAG51340.1|AC012562_1 unknown protein;
28504-31237 [Arabidopsis thaliana]
Length = 319
Score = 129 bits (324), Expect = 3e-29
Identities = 64/86 (74%), Positives = 73/86 (84%)
Frame = -3
Query: 613 GYEHXSEPLHILIEAELPAXIVDVRLRQAQEIIEEILKPVDESQDFYKRQQLRERAMLNS 434
GYEH +E LHILIEA+LP IVD++LRQAQEIIEE++KPVDESQD+ KRQQLRE A+LNS
Sbjct: 232 GYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQDYIKRQQLRELALLNS 291
Query: 433 NFREESPQLSGSVSPFTSNEIKRAKT 356
N RE SP SGSVSPF SN +KR KT
Sbjct: 292 NLRENSPGPSGSVSPFNSNAMKRPKT 317
>dbj|BAC21599.1| contains EST C27129(C51039)~similar to RNA-binding protein [Oryza
sativa (japonica cultivar-group)]
Length = 286
Score = 127 bits (319), Expect = 1e-28
Identities = 63/85 (74%), Positives = 74/85 (86%)
Frame = -3
Query: 613 GYEHXSEPLHILIEAELPAXIVDVRLRQAQEIIEEILKPVDESQDFYKRQQLRERAMLNS 434
GYEH ++PLHILIEAELPA I+D RLRQAQEI++E+LKPVDESQD+YKRQQLRE AMLNS
Sbjct: 200 GYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPVDESQDYYKRQQLRELAMLNS 259
Query: 433 NFREESPQLSGSVSPFTSNEIKRAK 359
RE+SP GSVSPF++ +KRAK
Sbjct: 260 TLREDSPH-PGSVSPFSNGGMKRAK 283
>dbj|BAB62585.1| P0454H12.18 [Oryza sativa (japonica cultivar-group)]
Length = 291
Score = 119 bits (298), Expect = 3e-26
Identities = 56/85 (65%), Positives = 69/85 (80%)
Frame = -3
Query: 613 GYEHXSEPLHILIEAELPAXIVDVRLRQAQEIIEEILKPVDESQDFYKRQQLRERAMLNS 434
GYEH S+P HILIEAELPA ++D RL QAQEI+E++LKPV+ESQDF KRQQLRE A+LNS
Sbjct: 206 GYEHLSDPTHILIEAELPADVIDTRLAQAQEILEDLLKPVEESQDFLKRQQLRELAVLNS 265
Query: 433 NFREESPQLSGSVSPFTSNEIKRAK 359
+RE+SP +GS SPF++ K K
Sbjct: 266 TYREDSPHQNGSASPFSNGSTKLGK 290
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,755,396
Number of Sequences: 1393205
Number of extensions: 9063976
Number of successful extensions: 19494
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 18945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19476
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
