Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003280A_C01 KMC003280A_c01
(769 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM34784.1|AF510671_1 HDA2 [Arabidopsis thaliana] 194 1e-48
gb|AAD40129.1|AF149413_10 contains similarity to histone deacety... 170 2e-41
gb|EAA00854.1| agCP12082 [Anopheles gambiae str. PEST] 135 5e-31
sp|Q9GKU5|HD11_MACFA Histone deacetylase 11 (HD11) 125 9e-28
dbj|BAB18987.1| hypothetical protein [Macaca fascicularis] 125 9e-28
>gb|AAM34784.1|AF510671_1 HDA2 [Arabidopsis thaliana]
Length = 340
Score = 194 bits (493), Expect = 1e-48
Identities = 100/133 (75%), Positives = 112/133 (84%)
Frame = -1
Query: 769 SRVYILDMYNSGIYPWAYDASTYIHHKVEVKSGTLTEEYLQSLD*ALEVAARRFKPELVI 590
+RVYILDMYN IYP+ Y A +I KVEV SGT T+EYL+ LD ALEVA+R F+PELVI
Sbjct: 206 NRVYILDMYNPEIYPFDYRARRFIDQKVEVMSGTTTDEYLRKLDEALEVASRNFQPELVI 265
Query: 589 YNAGTDILDGDPLGRVKINPDGIALRDEKVFRFAREKNIPIVMLTSGGYMNSSPRVIADS 410
YNAGTDILDGDPLG +KI+PDGI RDEKVFRFAREKNIP+VMLTSGGYM SS RVIADS
Sbjct: 266 YNAGTDILDGDPLGLLKISPDGITSRDEKVFRFAREKNIPLVMLTSGGYMKSSARVIADS 325
Query: 409 IVNLSFKCLIETR 371
I NLS + LI+TR
Sbjct: 326 IENLSRQGLIQTR 338
>gb|AAD40129.1|AF149413_10 contains similarity to histone deacetylases; Pfam PF00850,
Score=13.3, E=5e-10, N=1 [Arabidopsis thaliana]
Length = 316
Score = 170 bits (430), Expect = 2e-41
Identities = 88/116 (75%), Positives = 98/116 (83%)
Frame = -1
Query: 718 YDASTYIHHKVEVKSGTLTEEYLQSLD*ALEVAARRFKPELVIYNAGTDILDGDPLGRVK 539
Y A +I KVEV SGT T+EYL+ LD ALEVA+R F+PELVIYNAGTDILDGDPLG +K
Sbjct: 199 YRARRFIDQKVEVMSGTTTDEYLRKLDEALEVASRNFQPELVIYNAGTDILDGDPLGLLK 258
Query: 538 INPDGIALRDEKVFRFAREKNIPIVMLTSGGYMNSSPRVIADSIVNLSFKCLIETR 371
I+PDGI RDEKVFRFAREKNIP+VMLTSGGYM SS RVIADSI NLS + LI+TR
Sbjct: 259 ISPDGITSRDEKVFRFAREKNIPLVMLTSGGYMKSSARVIADSIENLSRQGLIQTR 314
>gb|EAA00854.1| agCP12082 [Anopheles gambiae str. PEST]
Length = 385
Score = 135 bits (341), Expect = 5e-31
Identities = 73/131 (55%), Positives = 88/131 (66%)
Frame = -1
Query: 766 RVYILDMYNSGIYPWAYDASTYIHHKVEVKSGTLTEEYLQSLD*ALEVAARRFKPELVIY 587
RV+ILDMYN IYP A I VE+K T EEYL+ L L + F+P +IY
Sbjct: 253 RVFILDMYNYRIYPRDQHAKLAIRRAVELKPHTDDEEYLRKLKHCLSQSIAEFEPNFIIY 312
Query: 586 NAGTDILDGDPLGRVKINPDGIALRDEKVFRFAREKNIPIVMLTSGGYMNSSPRVIADSI 407
NAGTDIL GDPLG + I P+G+ RDE VFR A E++IP+VML SGGY+ SS RVIA+SI
Sbjct: 313 NAGTDILKGDPLGLLDITPEGVVERDEFVFRSALERSIPLVMLLSGGYLRSSARVIANSI 372
Query: 406 VNLSFKCLIET 374
VNL K L+ T
Sbjct: 373 VNLRDKALLPT 383
>sp|Q9GKU5|HD11_MACFA Histone deacetylase 11 (HD11)
Length = 347
Score = 125 bits (313), Expect = 9e-28
Identities = 62/123 (50%), Positives = 86/123 (69%)
Frame = -1
Query: 766 RVYILDMYNSGIYPWAYDASTYIHHKVEVKSGTLTEEYLQSLD*ALEVAARRFKPELVIY 587
RVYI+D+YN IYP A I KVE++ GT +EYL ++ +E + + P++V+Y
Sbjct: 197 RVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIEKSLQEHLPDVVVY 256
Query: 586 NAGTDILDGDPLGRVKINPDGIALRDEKVFRFAREKNIPIVMLTSGGYMNSSPRVIADSI 407
NAGTDIL+GD LG + I+P GI RDE VFR R +++PI+M+TSGGY + R+IADSI
Sbjct: 257 NAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRHVPILMVTSGGYQKRTARIIADSI 316
Query: 406 VNL 398
+NL
Sbjct: 317 LNL 319
>dbj|BAB18987.1| hypothetical protein [Macaca fascicularis]
Length = 319
Score = 125 bits (313), Expect = 9e-28
Identities = 62/123 (50%), Positives = 86/123 (69%)
Frame = -1
Query: 766 RVYILDMYNSGIYPWAYDASTYIHHKVEVKSGTLTEEYLQSLD*ALEVAARRFKPELVIY 587
RVYI+D+YN IYP A I KVE++ GT +EYL ++ +E + + P++V+Y
Sbjct: 169 RVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIEKSLQEHLPDVVVY 228
Query: 586 NAGTDILDGDPLGRVKINPDGIALRDEKVFRFAREKNIPIVMLTSGGYMNSSPRVIADSI 407
NAGTDIL+GD LG + I+P GI RDE VFR R +++PI+M+TSGGY + R+IADSI
Sbjct: 229 NAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRHVPILMVTSGGYQKRTARIIADSI 288
Query: 406 VNL 398
+NL
Sbjct: 289 LNL 291
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 624,039,603
Number of Sequences: 1393205
Number of extensions: 13043927
Number of successful extensions: 37033
Number of sequences better than 10.0: 207
Number of HSP's better than 10.0 without gapping: 35835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36964
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
