Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003279A_C01 KMC003279A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM67162.1| glucose-inhibited division protein B-like protein... 116 2e-25
ref|NP_568720.1| putative protein; protein id: At5g50110.1, supp... 116 2e-25
dbj|BAB10297.1| contains similarity to glucose inhibited divisio... 104 9e-22
ref|NP_244928.1| glucose-inhibited division protein [Bacillus ha... 72 7e-12
ref|ZP_00046627.1| hypothetical protein [Lactobacillus gasseri] 70 1e-11
>gb|AAM67162.1| glucose-inhibited division protein B-like protein [Arabidopsis
thaliana]
Length = 196
Score = 116 bits (290), Expect = 2e-25
Identities = 50/87 (57%), Positives = 68/87 (77%)
Frame = -1
Query: 586 KIKILAEYCVPFVRVGGLFVLPKGHDLEDEVKKAESPIQKLGAFLLQVQSVELQSPYGKR 407
++++LAEYC+P VR+GGLFV KGHD ++EV+ AE+ ++ LG +LQ+ V+ SPYG+R
Sbjct: 110 EMRVLAEYCLPLVRIGGLFVAAKGHDPKEEVQNAENAVRLLGGSILQISPVDSHSPYGQR 169
Query: 406 TAVICLKDHPTPMKYPRDPGTPAKEPL 326
T V+C KDH TP KYPR+ GTPAK PL
Sbjct: 170 TTVVCRKDHSTPQKYPREAGTPAKLPL 196
>ref|NP_568720.1| putative protein; protein id: At5g50110.1, supported by cDNA:
97340. [Arabidopsis thaliana]
Length = 208
Score = 116 bits (290), Expect = 2e-25
Identities = 50/87 (57%), Positives = 68/87 (77%)
Frame = -1
Query: 586 KIKILAEYCVPFVRVGGLFVLPKGHDLEDEVKKAESPIQKLGAFLLQVQSVELQSPYGKR 407
++++LAEYC+P VR+GGLFV KGHD ++EV+ AE+ ++ LG +LQ+ V+ SPYG+R
Sbjct: 122 EMRVLAEYCLPLVRIGGLFVAAKGHDPKEEVQNAENAVRLLGGSILQISPVDSHSPYGQR 181
Query: 406 TAVICLKDHPTPMKYPRDPGTPAKEPL 326
T V+C KDH TP KYPR+ GTPAK PL
Sbjct: 182 TTVVCRKDHSTPQKYPREAGTPAKLPL 208
>dbj|BAB10297.1| contains similarity to glucose inhibited division protein
B~gene_id:MPF21.12 [Arabidopsis thaliana]
Length = 329
Score = 104 bits (259), Expect = 9e-22
Identities = 44/82 (53%), Positives = 62/82 (74%)
Frame = -1
Query: 586 KIKILAEYCVPFVRVGGLFVLPKGHDLEDEVKKAESPIQKLGAFLLQVQSVELQSPYGKR 407
++++LAEYC+P VR+GGLFV KGHD ++EV+ AE+ ++ LG +LQ+ V+ SPYG+R
Sbjct: 206 EMRVLAEYCLPLVRIGGLFVAAKGHDPKEEVQNAENAVRLLGGSILQISPVDSHSPYGQR 265
Query: 406 TAVICLKDHPTPMKYPRDPGTP 341
T V+C KDH TP KYPR+ P
Sbjct: 266 TTVVCRKDHSTPQKYPREAEDP 287
>ref|NP_244928.1| glucose-inhibited division protein [Bacillus halodurans]
gi|11132401|sp|Q9K5M8|GIDB_BACHD Methyltransferase gidB
(Glucose inhibited division protein B)
gi|25300029|pir||D84157 glucose-inhibited division
protein gidB [imported] - Bacillus halodurans (strain
C-125) gi|10176685|dbj|BAB07779.1| glucose-inhibited
division protein [Bacillus halodurans]
Length = 238
Score = 71.6 bits (174), Expect = 7e-12
Identities = 33/87 (37%), Positives = 51/87 (57%)
Frame = -1
Query: 586 KIKILAEYCVPFVRVGGLFVLPKGHDLEDEVKKAESPIQKLGAFLLQVQSVELQSPYGKR 407
++ +L+E C+P +V G FV KG +E+ A+ ++KLG ++Q + L +R
Sbjct: 151 RLPVLSELCLPLAKVEGTFVAMKGAGANEELTAAQGALKKLGGSVIQNEQFTLPIEESER 210
Query: 406 TAVICLKDHPTPMKYPRDPGTPAKEPL 326
+I K+ TP KYPR PGTP K+PL
Sbjct: 211 HVIIIRKERSTPKKYPRKPGTPNKQPL 237
>ref|ZP_00046627.1| hypothetical protein [Lactobacillus gasseri]
Length = 239
Score = 70.5 bits (171), Expect = 1e-11
Identities = 33/87 (37%), Positives = 53/87 (59%)
Frame = -1
Query: 586 KIKILAEYCVPFVRVGGLFVLPKGHDLEDEVKKAESPIQKLGAFLLQVQSVELQSPYGKR 407
++ +L+EYC+P +V G V KG +DE+ +A++ I+ LG + +V+ + L +R
Sbjct: 153 RMSVLSEYCIPLAKVDGYLVALKGPKAQDELVEAKNAIEVLGGRVEEVKELTLPDTDDER 212
Query: 406 TAVICLKDHPTPMKYPRDPGTPAKEPL 326
T ++ K TP KYPR GTP K+PL
Sbjct: 213 TLIVVKKVKATPKKYPRQAGTPNKKPL 239
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,597,258
Number of Sequences: 1393205
Number of extensions: 11572034
Number of successful extensions: 114451
Number of sequences better than 10.0: 555
Number of HSP's better than 10.0 without gapping: 36297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65330
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
