Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003277A_C01 KMC003277A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65075.1| inhibitor of apoptosis-like protein [Arabidopsis ... 88 6e-17
ref|NP_565200.1| expressed protein; protein id: At1g79110.1, sup... 88 6e-17
pir||T01044 hypothetical protein YUP8H12R.27 - Arabidopsis thali... 88 6e-17
ref|NP_566438.1| expressed protein; protein id: At3g12920.1, sup... 84 8e-16
ref|NP_193705.1| putative protein; protein id: At4g19700.1, supp... 80 1e-14
>gb|AAM65075.1| inhibitor of apoptosis-like protein [Arabidopsis thaliana]
Length = 358
Score = 88.2 bits (217), Expect = 6e-17
Identities = 44/86 (51%), Positives = 54/86 (62%), Gaps = 13/86 (15%)
Frame = -3
Query: 545 DSCCGSNVVAEDGEDTA-------------ATPTVKRMCRSCGVKESVVLLLPCRHLCLC 405
+SCCGS+ GE+T A +RMCR+CG +ES VLLLPCRHLCLC
Sbjct: 273 ESCCGSSC-GGGGEETVRRRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLCLC 331
Query: 404 TACGSTVRNCPVCDSGMDASVHVNLS 327
CGS+V CP+C S +ASVHVN+S
Sbjct: 332 GVCGSSVHTCPICTSPKNASVHVNMS 357
>ref|NP_565200.1| expressed protein; protein id: At1g79110.1, supported by cDNA:
36412. [Arabidopsis thaliana]
Length = 358
Score = 88.2 bits (217), Expect = 6e-17
Identities = 44/86 (51%), Positives = 54/86 (62%), Gaps = 13/86 (15%)
Frame = -3
Query: 545 DSCCGSNVVAEDGEDTA-------------ATPTVKRMCRSCGVKESVVLLLPCRHLCLC 405
+SCCGS+ GE+T A +RMCR+CG +ES VLLLPCRHLCLC
Sbjct: 273 ESCCGSSC-GGGGEETVRRRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLCLC 331
Query: 404 TACGSTVRNCPVCDSGMDASVHVNLS 327
CGS+V CP+C S +ASVHVN+S
Sbjct: 332 GVCGSSVHTCPICTSPKNASVHVNMS 357
>pir||T01044 hypothetical protein YUP8H12R.27 - Arabidopsis thaliana
gi|3152583|gb|AAC17064.1| Contains similarity to
inhibitor of apoptosis protein gb|U45881 from D.
melanogaster. [Arabidopsis thaliana]
Length = 347
Score = 88.2 bits (217), Expect = 6e-17
Identities = 44/86 (51%), Positives = 54/86 (62%), Gaps = 13/86 (15%)
Frame = -3
Query: 545 DSCCGSNVVAEDGEDTA-------------ATPTVKRMCRSCGVKESVVLLLPCRHLCLC 405
+SCCGS+ GE+T A +RMCR+CG +ES VLLLPCRHLCLC
Sbjct: 262 ESCCGSSC-GGGGEETVRRRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLCLC 320
Query: 404 TACGSTVRNCPVCDSGMDASVHVNLS 327
CGS+V CP+C S +ASVHVN+S
Sbjct: 321 GVCGSSVHTCPICTSPKNASVHVNMS 346
>ref|NP_566438.1| expressed protein; protein id: At3g12920.1, supported by cDNA: 924.
[Arabidopsis thaliana] gi|15795121|dbj|BAB02499.1|
gene_id:MGH6.3~unknown protein [Arabidopsis thaliana]
gi|26451940|dbj|BAC43062.1| unknown protein [Arabidopsis
thaliana]
Length = 335
Score = 84.3 bits (207), Expect = 8e-16
Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 11/83 (13%)
Frame = -3
Query: 542 SCCGSN----------VVAEDGEDTAATPTV-KRMCRSCGVKESVVLLLPCRHLCLCTAC 396
SCCGSN +A + +DT V MCRSCG E+ VLLLPCRH+CLC+ C
Sbjct: 252 SCCGSNDEGDSEEERWKLAGEAQDTKKMCRVGMSMCRSCGKGEASVLLLPCRHMCLCSVC 311
Query: 395 GSTVRNCPVCDSGMDASVHVNLS 327
GS++ CP+C S AS+HVNLS
Sbjct: 312 GSSLNTCPICKSPKTASLHVNLS 334
>ref|NP_193705.1| putative protein; protein id: At4g19700.1, supported by cDNA:
gi_17065053 [Arabidopsis thaliana]
gi|7487076|pir||T04751 hypothetical protein T16H5.60 -
Arabidopsis thaliana gi|3250679|emb|CAA19687.1| putative
protein [Arabidopsis thaliana]
gi|7268766|emb|CAB78972.1| putative protein [Arabidopsis
thaliana]
Length = 304
Score = 80.5 bits (197), Expect = 1e-14
Identities = 41/74 (55%), Positives = 49/74 (65%), Gaps = 2/74 (2%)
Frame = -3
Query: 542 SCCGSNVVAEDGEDTAATPTVKRMCRSCGVKESVVLLLPCRHLCLCTACGST--VRNCPV 369
SCCG DG A T V C+ CG +E+ VL+LPCRHLCLCT CG + +R CPV
Sbjct: 237 SCCG------DGGGEAVT-AVGGGCKRCGEREASVLVLPCRHLCLCTVCGGSALLRTCPV 289
Query: 368 CDSGMDASVHVNLS 327
CD M+ASVHVN+S
Sbjct: 290 CDMVMNASVHVNMS 303
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,060,528
Number of Sequences: 1393205
Number of extensions: 11035931
Number of successful extensions: 84660
Number of sequences better than 10.0: 710
Number of HSP's better than 10.0 without gapping: 57984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79947
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
