Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003276A_C01 KMC003276A_c01
(808 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61059.1| unknown [Arabidopsis thaliana] 119 4e-26
ref|NP_565249.1| expressed protein; protein id: At1g80950.1, sup... 117 3e-25
pir||E96842 hypothetical protein F23A5.31 [imported] - Arabidops... 117 3e-25
dbj|BAC38353.1| unnamed protein product [Mus musculus] 50 3e-05
dbj|BAC03425.1| FLJ00365 protein [Homo sapiens] 50 4e-05
>gb|AAM61059.1| unknown [Arabidopsis thaliana]
Length = 398
Score = 119 bits (299), Expect = 4e-26
Identities = 54/79 (68%), Positives = 68/79 (85%)
Frame = -2
Query: 807 VIFLLCXFVNNIEVIRLPVYYPSQQEMDDPQIYADNVRRLMATEGNLTLSDIGLAEKRIY 628
++FLLC FVN++EVIRLPVYYPSQ+E DDP++YA NVR+LMATEGNL LS++GL++KRIY
Sbjct: 320 ILFLLCQFVNHLEVIRLPVYYPSQEEKDDPKLYASNVRKLMATEGNLILSELGLSDKRIY 379
Query: 627 HAALNGNNSLPSVLHQKDD 571
HA LNGN S HQK++
Sbjct: 380 HATLNGNLSQTRDFHQKEE 398
>ref|NP_565249.1| expressed protein; protein id: At1g80950.1, supported by cDNA:
109415. [Arabidopsis thaliana]
gi|22135866|gb|AAM91515.1| unknown protein [Arabidopsis
thaliana] gi|28058882|gb|AAO29964.1| unknown protein
[Arabidopsis thaliana]
Length = 398
Score = 117 bits (292), Expect = 3e-25
Identities = 53/79 (67%), Positives = 67/79 (84%)
Frame = -2
Query: 807 VIFLLCXFVNNIEVIRLPVYYPSQQEMDDPQIYADNVRRLMATEGNLTLSDIGLAEKRIY 628
++FLLC VN++EVIRLPVYYPSQ+E DDP++YA NVR+LMATEGNL LS++GL++KRIY
Sbjct: 320 ILFLLCQVVNHLEVIRLPVYYPSQEEKDDPKLYASNVRKLMATEGNLILSELGLSDKRIY 379
Query: 627 HAALNGNNSLPSVLHQKDD 571
HA LNGN S HQK++
Sbjct: 380 HATLNGNLSQTRDFHQKEE 398
>pir||E96842 hypothetical protein F23A5.31 [imported] - Arabidopsis thaliana
gi|6503307|gb|AAF14683.1|AC011713_31 Is a member of the
PF|01553 Acyltransferase family. [Arabidopsis thaliana]
Length = 379
Score = 117 bits (292), Expect = 3e-25
Identities = 53/79 (67%), Positives = 67/79 (84%)
Frame = -2
Query: 807 VIFLLCXFVNNIEVIRLPVYYPSQQEMDDPQIYADNVRRLMATEGNLTLSDIGLAEKRIY 628
++FLLC VN++EVIRLPVYYPSQ+E DDP++YA NVR+LMATEGNL LS++GL++KRIY
Sbjct: 301 ILFLLCQVVNHLEVIRLPVYYPSQEEKDDPKLYASNVRKLMATEGNLILSELGLSDKRIY 360
Query: 627 HAALNGNNSLPSVLHQKDD 571
HA LNGN S HQK++
Sbjct: 361 HATLNGNLSQTRDFHQKEE 379
>dbj|BAC38353.1| unnamed protein product [Mus musculus]
Length = 534
Score = 50.4 bits (119), Expect = 3e-05
Identities = 26/68 (38%), Positives = 41/68 (60%)
Frame = -2
Query: 795 LCXFVNNIEVIRLPVYYPSQQEMDDPQIYADNVRRLMATEGNLTLSDIGLAEKRIYHAAL 616
LC F N +E+ LPVY PS++E +P +YA NVRR+MA ++++D + ++ A
Sbjct: 262 LCQFQNQVEIEFLPVYCPSEEEKRNPALYASNVRRVMAKALGVSVTDYTFEDCQL--ALA 319
Query: 615 NGNNSLPS 592
G LP+
Sbjct: 320 EGQLRLPA 327
>dbj|BAC03425.1| FLJ00365 protein [Homo sapiens]
Length = 399
Score = 50.1 bits (118), Expect = 4e-05
Identities = 26/68 (38%), Positives = 41/68 (60%)
Frame = -2
Query: 795 LCXFVNNIEVIRLPVYYPSQQEMDDPQIYADNVRRLMATEGNLTLSDIGLAEKRIYHAAL 616
LC F N +E+ LPVY PS++E +P +YA NVRR+MA ++++D + ++ A
Sbjct: 127 LCQFHNQVEIEFLPVYSPSEEEKRNPALYASNVRRVMAEALGVSVTDYTFEDCQL--ALA 184
Query: 615 NGNNSLPS 592
G LP+
Sbjct: 185 EGQLRLPA 192
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 657,708,608
Number of Sequences: 1393205
Number of extensions: 13999160
Number of successful extensions: 30959
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 28896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30873
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41176381974
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
