Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003273A_C01 KMC003273A_c01
(452 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO27790.1| merozoite surface protein 1 [Plasmodium vivax] 38 0.054
prf||1814452C Hyp-rich glycoprotein 35 0.27
ref|NP_604476.1| putative capsid protein [Atkinsonella hypoxylon... 35 0.46
prf||1814452B Hyp-rich glycoprotein 33 1.3
gb|AAF34661.1|AF221715_1 split ends long isoform [Drosophila mel... 33 1.7
>gb|AAO27790.1| merozoite surface protein 1 [Plasmodium vivax]
Length = 177
Score = 37.7 bits (86), Expect = 0.054
Identities = 18/48 (37%), Positives = 24/48 (49%)
Frame = +1
Query: 220 TPAPPHPSPLVAPPTNSWAKCMRPHPLPT*LYL*VILNTIKPTFAAHR 363
T A P P+P V P T C R P P YL +L+ +K +A H+
Sbjct: 127 TQASPEPAPAVPPSTPGCRSCSRHQPCPKLEYLQKLLDFLKSAYACHK 174
>prf||1814452C Hyp-rich glycoprotein
Length = 349
Score = 35.4 bits (80), Expect = 0.27
Identities = 16/42 (38%), Positives = 21/42 (49%)
Frame = +1
Query: 178 PDYNNTSKP*NQNFTPAPPHPSPLVAPPTNSWAKCMRPHPLP 303
P Y + KP +TP P P+P PPT + A +P P P
Sbjct: 82 PTYTPSPKPTPPTYTPTPTPPTPKPTPPTYTPAPTPKPTPTP 123
>ref|NP_604476.1| putative capsid protein [Atkinsonella hypoxylon partitivirus]
gi|639797|gb|AAA61830.1| ORF; putative
gi|1097758|prf||2114360B ORF
Length = 652
Score = 34.7 bits (78), Expect = 0.46
Identities = 18/41 (43%), Positives = 23/41 (55%)
Frame = +1
Query: 148 VTSIYKDTNDPDYNNTSKP*NQNFTPAPPHPSPLVAPPTNS 270
VT++ DTN P N+TS + PPHP+P V PT S
Sbjct: 27 VTAVLPDTNGPTTNSTSG------SVGPPHPTPNVPVPTQS 61
>prf||1814452B Hyp-rich glycoprotein
Length = 327
Score = 33.1 bits (74), Expect = 1.3
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 178 PDYNNTSKP*NQNFTPAPPHPSPLVAPPTNSWAKCMRPHPLPT 306
P Y + KP +TP P P P PPT + A +P P PT
Sbjct: 82 PTYTPSPKPTPPTYTPTPTPPKP--TPPTYTPAPTPKPTPKPT 122
Score = 30.4 bits (67), Expect = 8.6
Identities = 14/37 (37%), Positives = 19/37 (50%)
Frame = +1
Query: 193 TSKP*NQNFTPAPPHPSPLVAPPTNSWAKCMRPHPLP 303
T KP +TP+P P+P PPT + + HP P
Sbjct: 205 TPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPTHPTP 241
Score = 30.4 bits (67), Expect = 8.6
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 160 YKDTNDPDYNNTSKP*NQNFTPAPPHPSPLVAPPTNSWA-KCMRPHPLP 303
Y + P + T KP +TP+P P+P PPT + + K P P P
Sbjct: 229 YTPSPKPPTHPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPTPKPTP 277
>gb|AAF34661.1|AF221715_1 split ends long isoform [Drosophila melanogaster]
Length = 5554
Score = 32.7 bits (73), Expect = 1.7
Identities = 17/42 (40%), Positives = 21/42 (49%)
Frame = -1
Query: 350 KVGLIVLSMTHR*SQVGKGWGRMHLAQLFVGGATSGLGCGGA 225
K G++ S G G G +L Q GG+T GLGC GA
Sbjct: 1307 KFGVLFFQQQQSRSSGGGGAGNSYLQQQLGGGSTGGLGCIGA 1348
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,913,471
Number of Sequences: 1393205
Number of extensions: 8905117
Number of successful extensions: 33418
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 28453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32848
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
