Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003272A_C01 KMC003272A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM67007.1| unknown [Arabidopsis thaliana] 106 2e-22
pir||T45792 hypothetical protein F26O13.250 - Arabidopsis thalia... 106 2e-22
ref|NP_566953.1| putative protein; protein id: At3g51610.1, supp... 106 2e-22
ref|NP_764318.1| phosphoribosylaminoimidazole carboxylase ATPase... 34 1.5
gb|ZP_00069486.1| hypothetical protein [Oenococcus oeni MCW] 31 9.7
>gb|AAM67007.1| unknown [Arabidopsis thaliana]
Length = 227
Score = 106 bits (264), Expect = 2e-22
Identities = 51/70 (72%), Positives = 59/70 (83%), Gaps = 1/70 (1%)
Frame = -1
Query: 580 WPKHILVRYTWKEHSEIDVTSGFYVLFGSGLMLSFILSIYILQSSRDKLERFVRETVA-V 404
WPKH+LVRYTWKE SEIDV+SGFYVLFGS L SF+LSIY+LQSSR+KL RFVRETV
Sbjct: 156 WPKHVLVRYTWKEQSEIDVSSGFYVLFGSALTFSFVLSIYVLQSSREKLARFVRETVVES 215
Query: 403 SNVPIGEIAK 374
S++ +GE K
Sbjct: 216 SSMNVGEFGK 225
>pir||T45792 hypothetical protein F26O13.250 - Arabidopsis thaliana
gi|4902482|emb|CAB43523.1| hypothetical protein
[Arabidopsis thaliana] gi|6572082|emb|CAB63025.1|
putative protein [Arabidopsis thaliana]
Length = 189
Score = 106 bits (264), Expect = 2e-22
Identities = 51/70 (72%), Positives = 59/70 (83%), Gaps = 1/70 (1%)
Frame = -1
Query: 580 WPKHILVRYTWKEHSEIDVTSGFYVLFGSGLMLSFILSIYILQSSRDKLERFVRETVA-V 404
WPKH+LVRYTWKE SEIDV+SGFYVLFGS L SF+LSIY+LQSSR+KL RFVRETV
Sbjct: 118 WPKHVLVRYTWKEQSEIDVSSGFYVLFGSALTFSFVLSIYVLQSSREKLARFVRETVVES 177
Query: 403 SNVPIGEIAK 374
S++ +GE K
Sbjct: 178 SSMNVGEFGK 187
>ref|NP_566953.1| putative protein; protein id: At3g51610.1, supported by cDNA: 9188.
[Arabidopsis thaliana] gi|22531176|gb|AAM97092.1|
putative protein [Arabidopsis thaliana]
Length = 230
Score = 106 bits (264), Expect = 2e-22
Identities = 51/70 (72%), Positives = 59/70 (83%), Gaps = 1/70 (1%)
Frame = -1
Query: 580 WPKHILVRYTWKEHSEIDVTSGFYVLFGSGLMLSFILSIYILQSSRDKLERFVRETVA-V 404
WPKH+LVRYTWKE SEIDV+SGFYVLFGS L SF+LSIY+LQSSR+KL RFVRETV
Sbjct: 159 WPKHVLVRYTWKEQSEIDVSSGFYVLFGSALTFSFVLSIYVLQSSREKLARFVRETVVES 218
Query: 403 SNVPIGEIAK 374
S++ +GE K
Sbjct: 219 SSMNVGEFGK 228
>ref|NP_764318.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
[Staphylococcus epidermidis ATCC 12228]
gi|27315225|gb|AAO04360.1|AE016746_150
phosphoribosylaminoimidazole carboxylase ATPase subunit
[Staphylococcus epidermidis ATCC 12228]
Length = 375
Score = 33.9 bits (76), Expect = 1.5
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Frame = +1
Query: 100 FEAFHLIQCYNTDFP--INGNTSKLSPVVLLFTSQLPVKKIYPLQFTLTPFIMETSYGSY 273
++A L+Q T+ + NT ++ P V + T+Q +K I L F PFI++T +G Y
Sbjct: 99 YQAIELLQDRLTEKQTLLEANT-QIVPFVQIQTNQDLLKAIEKLGF---PFIVKTRFGGY 154
Query: 274 LGMQELLIPNCSLTIHEYNKTVLYKWH*ECIIQPWLSLQ 390
G ++L+ N S E ++ EC+ + +L +Q
Sbjct: 155 DGKGQILVRNDS----ELDEAYQLVEKQECVAEQYLDIQ 189
>gb|ZP_00069486.1| hypothetical protein [Oenococcus oeni MCW]
Length = 104
Score = 31.2 bits (69), Expect = 9.7
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 577 PKHILVRYTWKEHSEIDVTSGFYVLFGSGL 488
PK+ LV +TW S+ID SG +V+ SG+
Sbjct: 17 PKYDLVTFTWGNVSQIDRESGLFVIKPSGV 46
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,326,355
Number of Sequences: 1393205
Number of extensions: 9911314
Number of successful extensions: 20633
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20632
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
