Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003269A_C01 KMC003269A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565433.1| expressed protein; protein id: At2g18290.1, sup... 101 6e-21
gb|AAM64688.1| unknown [Arabidopsis thaliana] 101 6e-21
gb|AAD39595.1|AC007858_9 ESTs dbj|D15316 and dbj|C98044 come fro... 98 9e-20
ref|NP_055700.1| anaphase-promoting complex 10 [Homo sapiens] gi... 53 2e-06
gb|EAA00431.1| agCP9951 [Anopheles gambiae str. PEST] 52 5e-06
>ref|NP_565433.1| expressed protein; protein id: At2g18290.1, supported by cDNA:
32047. [Arabidopsis thaliana] gi|20197809|gb|AAD15507.2|
expressed protein [Arabidopsis thaliana]
Length = 192
Score = 101 bits (252), Expect = 6e-21
Identities = 44/50 (88%), Positives = 49/50 (98%)
Frame = -2
Query: 581 MLQIAVLSNHLNGRDTHVRQIKVYGPRPNPIPHQPYQFTSREFITYSTIR 432
MLQIA+LSNHLNGRDTH+RQIKVYGPRPNPIPHQP+QFTS EF+TYST+R
Sbjct: 143 MLQIAILSNHLNGRDTHIRQIKVYGPRPNPIPHQPFQFTSMEFLTYSTLR 192
>gb|AAM64688.1| unknown [Arabidopsis thaliana]
Length = 192
Score = 101 bits (252), Expect = 6e-21
Identities = 44/50 (88%), Positives = 49/50 (98%)
Frame = -2
Query: 581 MLQIAVLSNHLNGRDTHVRQIKVYGPRPNPIPHQPYQFTSREFITYSTIR 432
MLQIA+LSNHLNGRDTH+RQIKVYGPRPNPIPHQP+QFTS EF+TYST+R
Sbjct: 143 MLQIAILSNHLNGRDTHIRQIKVYGPRPNPIPHQPFQFTSMEFLTYSTLR 192
>gb|AAD39595.1|AC007858_9 ESTs dbj|D15316 and dbj|C98044 come from this gene. [Oryza sativa]
Length = 239
Score = 97.8 bits (242), Expect = 9e-20
Identities = 41/50 (82%), Positives = 48/50 (96%)
Frame = -2
Query: 581 MLQIAVLSNHLNGRDTHVRQIKVYGPRPNPIPHQPYQFTSREFITYSTIR 432
MLQI+VLSNHLNGRDTH+RQIK+YGPRPN +PHQP+ FTSREF+TYST+R
Sbjct: 152 MLQISVLSNHLNGRDTHIRQIKIYGPRPNHVPHQPFHFTSREFVTYSTVR 201
>ref|NP_055700.1| anaphase-promoting complex 10 [Homo sapiens] gi|7512765|pir||T12476
hypothetical protein DKFZp564L0562.1 - human
gi|5262509|emb|CAB45705.1| hypothetical protein [Homo
sapiens]
Length = 185
Score = 53.1 bits (126), Expect = 2e-06
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = -2
Query: 581 MLQIAVLSNHLNGRDTHVRQIKVYGPRPNPIPHQPYQFTSREFITYSTIR 432
M+QIAVL+NHLNGRDTH+RQIK+Y P + + T+ +F+ Y +IR
Sbjct: 136 MIQIAVLANHLNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185
>gb|EAA00431.1| agCP9951 [Anopheles gambiae str. PEST]
Length = 185
Score = 52.0 bits (123), Expect = 5e-06
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Frame = -2
Query: 581 MLQIAVLSNHLNGRDTHVRQIKVYGPRPN---PIPHQPYQFTSREFITYSTIR 432
M+QIAV+SNH NGRDTH+RQI+++ P P+ H +F++ EF + TIR
Sbjct: 134 MIQIAVISNHQNGRDTHMRQIRIHSPTEGSQYPLEHHG-KFSTIEFSQFRTIR 185
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,597,828
Number of Sequences: 1393205
Number of extensions: 9143806
Number of successful extensions: 17750
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 17281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17749
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
