Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003268A_C02 KMC003268A_c02
(838 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187476.1| unknown protein; protein id: At3g08640.1, suppo... 51 2e-05
ref|NP_187475.1| unknown protein; protein id: At3g08630.1 [Arabi... 50 3e-05
dbj|BAB85250.1| P0425G02.25 [Oryza sativa (japonica cultivar-gro... 48 2e-04
ref|NP_357111.1| AGR_L_2659p [Agrobacterium tumefaciens] gi|1793... 33 5.2
ref|NP_596170.1| putative glycoprotein [Schizosaccharomyces pomb... 33 6.8
>ref|NP_187476.1| unknown protein; protein id: At3g08640.1, supported by cDNA:
gi_19698960 [Arabidopsis thaliana]
gi|12322723|gb|AAG51347.1|AC012562_8 unknown protein;
33915-34928 [Arabidopsis thaliana]
gi|19698961|gb|AAL91216.1| unknown protein [Arabidopsis
thaliana] gi|22136296|gb|AAM91226.1| unknown protein
[Arabidopsis thaliana]
Length = 337
Score = 51.2 bits (121), Expect = 2e-05
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = -1
Query: 838 SVLVLRCLNNVLGGVSFVVLARLTGAQSVGEEKPTPAYVKVGLTDKEK 695
SV+VLRC NNV GG+SFV+LAR+TG+QSV E K +++KEK
Sbjct: 296 SVIVLRCANNVAGGMSFVLLARMTGSQSVEE--------KTEISEKEK 335
>ref|NP_187475.1| unknown protein; protein id: At3g08630.1 [Arabidopsis thaliana]
gi|12322720|gb|AAG51344.1|AC012562_5 unknown protein;
31866-32885 [Arabidopsis thaliana]
Length = 339
Score = 50.4 bits (119), Expect = 3e-05
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = -1
Query: 838 SVLVLRCLNNVLGGVSFVVLARLTGAQSVGEEK 740
SV+ LR +NNVLGG+SFV LAR+TG+QSV EEK
Sbjct: 293 SVIALRVVNNVLGGMSFVTLARMTGSQSVEEEK 325
>dbj|BAB85250.1| P0425G02.25 [Oryza sativa (japonica cultivar-group)]
gi|20161467|dbj|BAB90391.1| P0432B10.9 [Oryza sativa
(japonica cultivar-group)]
Length = 401
Score = 48.1 bits (113), Expect = 2e-04
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = -1
Query: 838 SVLVLRCLNNVLGGVSFVVLARLTGAQSVGEEKPTPAYVKVGLTDKEKV 692
SV+ LRC+NNVLGG+SFV+LARLTG+Q + PA +KE++
Sbjct: 336 SVVALRCINNVLGGMSFVLLARLTGSQ----KSDAPAASATAEEEKERL 380
>ref|NP_357111.1| AGR_L_2659p [Agrobacterium tumefaciens]
gi|17937207|ref|NP_533996.1| hypothetical protein
[Agrobacterium tumefaciens str. C58 (U. Washington)]
gi|25380044|pir||F98296 hypothetical protein AGR_L_2659
[imported] - Agrobacterium tumefaciens (strain C58,
Cereon) gi|25380045|pir||AB2987 hypothetical protein
Atu3499 [imported] - Agrobacterium tumefaciens (strain
C58, Dupont) gi|15159843|gb|AAK89896.1| AGR_L_2659p
[Agrobacterium tumefaciens str. C58 (Cereon)]
gi|17741902|gb|AAL44312.1| hypothetical protein
[Agrobacterium tumefaciens str. C58 (U. Washington)]
Length = 151
Score = 33.1 bits (74), Expect = 5.2
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +2
Query: 383 WGVRGPIHGHNINLAPYCSGCRFSPTYKQQMPEICSQSPTSQSNPSYLFGAARFMKF*KN 562
W +RG H ++ L P+ + FSPT ++ P+ S + S+S + + K
Sbjct: 4 WQMRGLAHSISLPLPPHPAAATFSPTGRRSEPQPLSLTALSESCTDLSCPQSHLLL--KE 61
Query: 563 QKTNLSNNLGQS 598
QK N N+ +
Sbjct: 62 QKVNFEGNMSDT 73
>ref|NP_596170.1| putative glycoprotein [Schizosaccharomyces pombe]
gi|12044479|emb|CAC19752.1| putative glycoprotein
[Schizosaccharomyces pombe]
Length = 244
Score = 32.7 bits (73), Expect = 6.8
Identities = 33/108 (30%), Positives = 46/108 (42%)
Frame = +3
Query: 513 TLLTYLVLPDS*NFRKTKKLTSPTTLVNQTKRQTTKPS*VLMIHHFDGVVV*FSLSLSTS 692
T +T +V P S + T PTT +N T TT P + SL+T+
Sbjct: 64 TNITSIVPPPSTSHNSTTTTVPPTTSMNTT---TTVPP---------------TTSLNTT 105
Query: 693 TFSLSVNPTFTYAGVGFSSPTLCAPVSLANTTKDTPPRTLFKHLNTNT 836
T + P T+ S+ T+ P + NTT PP T H+NT T
Sbjct: 106 T---TTAPPTTHVN---STTTVVPPTTHVNTTTVVPPTT---HVNTTT 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 747,315,629
Number of Sequences: 1393205
Number of extensions: 17288699
Number of successful extensions: 59601
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 54639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59354
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 43480044972
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
