Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003266A_C01 KMC003266A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200455.1| F-box protein; protein id: At5g56440.1 [Arabido... 57 2e-07
ref|NP_680443.1| similar to F-box protein; protein id: At5g56325... 52 5e-06
dbj|BAB10147.1| contains similarity to heat shock transcription ... 51 9e-06
ref|NP_194365.1| F-box protein; protein id: At4g26350.1 [Arabido... 50 1e-05
ref|NP_199298.1| putative protein; protein id: At5g44850.1 [Arab... 49 3e-05
>ref|NP_200455.1| F-box protein; protein id: At5g56440.1 [Arabidopsis thaliana]
gi|10177843|dbj|BAB11272.1|
emb|CAB62440.1~gene_id:MCD7.20~similar to unknown
protein [Arabidopsis thaliana]
Length = 430
Score = 56.6 bits (135), Expect = 2e-07
Identities = 37/108 (34%), Positives = 49/108 (45%)
Frame = -1
Query: 482 KFSLALDMLNRCSKLQTVVFNLDGRDDVWPYPCSVPECFSSHLTKCILENFDAVECHMRF 303
KF LD L RC V W P SVP+C S L ++ E +
Sbjct: 328 KFYQLLDPLKRCCSSSVDV------QTQWEQPSSVPKCLISSLETVEWIDYKGREVEKKV 381
Query: 302 ARYVMQNSTSLRTLTICSKKYLNYQEKLQMITELASYPRSSAICELLF 159
Y+++NS L+T+ I S K N EKL+M+ EL+S R C L F
Sbjct: 382 VMYLLENSRQLKTMAIRSLKSTNDNEKLKMLQELSSIHRICTKCGLSF 429
>ref|NP_680443.1| similar to F-box protein; protein id: At5g56325.1 [Arabidopsis
thaliana]
Length = 264
Score = 51.6 bits (122), Expect = 5e-06
Identities = 26/80 (32%), Positives = 43/80 (53%)
Frame = -1
Query: 398 WPYPCSVPECFSSHLTKCILENFDAVECHMRFARYVMQNSTSLRTLTICSKKYLNYQEKL 219
W P S+PEC + +L E++ E A +++++S L+ TI + + + EKL
Sbjct: 184 WSEPSSIPECLTHNLETFKWEHYYGAEEEKEVAAFILRSSICLKKATIILHRSIVHDEKL 243
Query: 218 QMITELASYPRSSAICELLF 159
+M EL+ P S IC+L F
Sbjct: 244 EMNKELSLLPICSPICQLAF 263
>dbj|BAB10147.1| contains similarity to heat shock transcription factor
HSF30~gene_id:MBB18.12 [Arabidopsis thaliana]
Length = 411
Score = 50.8 bits (120), Expect = 9e-06
Identities = 34/101 (33%), Positives = 51/101 (49%), Gaps = 10/101 (9%)
Frame = -1
Query: 431 VVFNL--------DGRDDV--WPYPCSVPECFSSHLTKCILENFDAVECHMRFARYVMQN 282
+VFNL D R+D+ W P SV EC S L + A Y+++N
Sbjct: 307 MVFNLILLLGLIDDERNDIVCWNQPSSVLECLLSSLKILNWSAYFGRPQDRDIAVYILKN 366
Query: 281 STSLRTLTICSKKYLNYQEKLQMITELASYPRSSAICELLF 159
+ L+T T + K +N +L+MI EL PR+S+ C+L+F
Sbjct: 367 ACHLKTATFLTDKRINDVRRLKMIKELRLSPRASSTCQLVF 407
>ref|NP_194365.1| F-box protein; protein id: At4g26350.1 [Arabidopsis thaliana]
gi|7487425|pir||T06019 hypothetical protein T25K17.160 -
Arabidopsis thaliana gi|4539431|emb|CAB38964.1| putative
protein [Arabidopsis thaliana]
gi|7269487|emb|CAB79490.1| putative protein [Arabidopsis
thaliana]
Length = 431
Score = 50.1 bits (118), Expect = 1e-05
Identities = 28/81 (34%), Positives = 40/81 (48%)
Frame = -1
Query: 398 WPYPCSVPECFSSHLTKCILENFDAVECHMRFARYVMQNSTSLRTLTICSKKYLNYQEKL 219
W P SVP C S L + + +YV++N+T L+ SK ++ EK
Sbjct: 349 WKRPSSVPACLLSSLQAFTWSGYKGRQGDKEVVKYVLRNATGLKKRIFISKSN-DFGEKF 407
Query: 218 QMITELASYPRSSAICELLFE 156
M+ ELAS P S C+LLF+
Sbjct: 408 CMLQELASVPTPSPSCQLLFD 428
>ref|NP_199298.1| putative protein; protein id: At5g44850.1 [Arabidopsis thaliana]
gi|2660665|gb|AAC79136.1| hypothetical protein
[Arabidopsis thaliana] gi|10177475|dbj|BAB10866.1|
gb|AAC79136.1~gene_id:K21C13.2~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 331
Score = 49.3 bits (116), Expect = 3e-05
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Frame = -1
Query: 398 WPYPCSVPECFSSHLTKCILENFDAVECH------MRFARYVMQNSTSLRTLTICSKKYL 237
W P SVP C SSH LE F+ VE + + F Y++ NS L+ TI +
Sbjct: 250 WNEPSSVPGCLSSH-----LEIFEWVEKYGGRVEELGFVTYILANSKCLKRATISLRSAF 304
Query: 236 NYQEKLQMITELASYPRSSAICELLFE 156
N ++K +++ EL S PR S +LL +
Sbjct: 305 NLEQKQKVMKELDSIPRVSKSSQLLLK 331
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,665,197
Number of Sequences: 1393205
Number of extensions: 7406117
Number of successful extensions: 21055
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 20381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21022
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
