Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003262A_C01 KMC003262A_c01
(444 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_218599.1| similar to MrgB3 G protein-coupled receptor [Mu... 32 2.3
ref|NP_212278.1| glycine betaine, L-proline ABC transporter, gly... 30 5.2
ref|NP_621893.1| Trk-type K+ transport systems, membrane compone... 30 6.7
gb|ZP_00104953.1| hypothetical protein [Prochlorococcus marinus ... 30 6.7
ref|NP_505813.1| 7 transmembrane chemoreceptor family member fam... 30 6.7
>ref|XP_218599.1| similar to MrgB3 G protein-coupled receptor [Mus musculus] [Rattus
norvegicus]
Length = 322
Score = 31.6 bits (70), Expect = 2.3
Identities = 17/57 (29%), Positives = 30/57 (51%)
Frame = -3
Query: 418 KIISDDNVIFLIITFLFICCLYILLFSSFSCQFRG*WTARVVHPVRIFVTFKWRSRF 248
+II+ + +LI+ F+ +CC ++L SC ++ VH R++VT R F
Sbjct: 177 EIINFISSAWLIVLFVVLCCFSLILLLRISC------GSQQVHVTRLYVTISLRVLF 227
>ref|NP_212278.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein (proX)
[Borrelia burgdorferi] gi|7463192|pir||H70117 glycine
betaine, L-proline ABC transporter, glycine/betaine/
L-proline-binding protein (proX) homolog - Lyme disease
spirochete gi|2688024|gb|AAC66525.1| glycine betaine,
L-proline ABC transporter,
glycine/betaine/L-proline-binding protein (proX)
[Borrelia burgdorferi B31]
Length = 290
Score = 30.4 bits (67), Expect = 5.2
Identities = 17/39 (43%), Positives = 25/39 (63%)
Frame = -2
Query: 371 VYLLFIYFIIFLLFLSIQRLMDCQSRPSSKNLCYVQVAF 255
+Y LF++FIIF +FLS C + SSKNL V++ +
Sbjct: 1 MYKLFLFFIIF-MFLS------CDEKKSSKNLKSVKIGY 32
>ref|NP_621893.1| Trk-type K+ transport systems, membrane components
[Thermoanaerobacter tengcongensis]
gi|20515178|gb|AAM23497.1| Trk-type K+ transport
systems, membrane components [Thermoanaerobacter
tengcongensis]
Length = 444
Score = 30.0 bits (66), Expect = 6.7
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 336 EENNKIYKQQINRNVIIRNITLSSDIIFLIF 428
EE +YK+ I+RN++ + + +S +F+IF
Sbjct: 329 EEETVLYKRTISRNIVYKAVAISFISVFIIF 359
>gb|ZP_00104953.1| hypothetical protein [Prochlorococcus marinus subsp. pastoris str.
CCMP1378]
Length = 264
Score = 30.0 bits (66), Expect = 6.7
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = -3
Query: 400 NVIFLIITFLFICCLYILLFSS-FSCQFRG*WTARVVHPVRIFVTFKWRSRFKWA*SPII 224
N+ FL+ +CC ++L+S F W + + + +F + RF
Sbjct: 144 NLSFLLSCLTTLCCSILILYSLWFLISTTTIWFVKTWNATEVLRSFLYIGRFPLNSFSFS 203
Query: 223 FAICIVIFIVIE*LTSLRHSHLFTSILYYWSVL 125
I IF+ I +T++ S +F I W +L
Sbjct: 204 LRIFFSIFVPIAFITTI-PSEVFLGIALLWEIL 235
>ref|NP_505813.1| 7 transmembrane chemoreceptor family member family member
[Caenorhabditis elegans] gi|7497448|pir||T19955
hypothetical protein C45B11.4 - Caenorhabditis elegans
gi|3874989|emb|CAA98432.1| C. elegans SRH-74 protein
(corresponding sequence C45B11.4) [Caenorhabditis
elegans]
Length = 334
Score = 30.0 bits (66), Expect = 6.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 394 IFLIITFLFICCLYILLFSS 335
IF+ + F F+CCLY + FS+
Sbjct: 223 IFIQVAFFFLCCLYYIYFST 242
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 315,521,785
Number of Sequences: 1393205
Number of extensions: 6034135
Number of successful extensions: 14090
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14007
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
