Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003260A_C01 KMC003260A_c01
(476 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192740.1| putative oxidoreductase; protein id: At4g10020.... 59 3e-08
dbj|BAC20620.1| similar to RANBP9 isoform 1 [Oryza sativa (japon... 56 2e-07
gb|AAM46847.1|AF498264_1 steroleosin-B [Sesamum indicum] 56 2e-07
ref|NP_173942.1| hypothetical protein; protein id: At1g26170.1 [... 55 4e-07
gb|AAL09328.1|AF302806_1 steroleosin [Sesamum indicum] gi|160337... 35 0.32
>ref|NP_192740.1| putative oxidoreductase; protein id: At4g10020.1 [Arabidopsis
thaliana] gi|7484775|pir||T04006 11beta-hydroxysteroid
dehydrogenase homolog T5L19.150 - Arabidopsis thaliana
gi|4539005|emb|CAB39626.1| putative oxidoreductase
[Arabidopsis thaliana] gi|7267698|emb|CAB78125.1|
putative oxidoreductase [Arabidopsis thaliana]
Length = 389
Score = 58.9 bits (141), Expect = 3e-08
Identities = 26/39 (66%), Positives = 33/39 (83%), Gaps = 3/39 (7%)
Frame = -3
Query: 465 DIIFWGNVHPMFVALPYLHQSYGRVIINASL---LPLPR 358
DI FWGNV+P +VALPYLHQ+ GR+++NAS+ LPLPR
Sbjct: 157 DINFWGNVYPTYVALPYLHQTNGRIVVNASVENWLPLPR 195
>dbj|BAC20620.1| similar to RANBP9 isoform 1 [Oryza sativa (japonica
cultivar-group)]
Length = 1072
Score = 56.2 bits (134), Expect = 2e-07
Identities = 26/37 (70%), Positives = 33/37 (88%)
Frame = -1
Query: 341 EIPGAYQIKVTTSALALLLTSRHNELAKIHVNGHLIK 231
EI GAYQIKVTT+ALALL+++RH EL++I V GH+IK
Sbjct: 880 EIQGAYQIKVTTTALALLISTRHPELSRIEVQGHIIK 916
>gb|AAM46847.1|AF498264_1 steroleosin-B [Sesamum indicum]
Length = 362
Score = 56.2 bits (134), Expect = 2e-07
Identities = 26/39 (66%), Positives = 32/39 (81%), Gaps = 3/39 (7%)
Frame = -3
Query: 465 DIIFWGNVHPMFVALPYLHQSYGRVIINASL---LPLPR 358
DI FWGNV+P +VALPYL +S GR+I+NAS+ LPLPR
Sbjct: 156 DINFWGNVYPTYVALPYLRESNGRIIVNASVENWLPLPR 194
>ref|NP_173942.1| hypothetical protein; protein id: At1g26170.1 [Arabidopsis
thaliana] gi|25518773|pir||H86387 hypothetical protein
F28B23.15 - Arabidopsis thaliana
gi|12321178|gb|AAG50680.1|AC079829_13 hypothetical
protein [Arabidopsis thaliana]
Length = 931
Score = 55.1 bits (131), Expect = 4e-07
Identities = 33/62 (53%), Positives = 41/62 (65%)
Frame = -1
Query: 416 TFTKAMVVLLSMQVCYLYPDEFIWREIPGAYQIKVTTSALALLLTSRHNELAKIHVNGHL 237
+FT M Q +LYP W EI AYQIKVTTSALALLL++RH+E AK++V G
Sbjct: 724 SFTYVMTEWTKQQGKHLYP----W-EIQSAYQIKVTTSALALLLSTRHSEFAKVNVPGSP 778
Query: 236 IK 231
I+
Sbjct: 779 IQ 780
>gb|AAL09328.1|AF302806_1 steroleosin [Sesamum indicum] gi|16033752|gb|AAL13315.1|AF421889_1
steroleosin [Sesamum indicum]
Length = 348
Score = 35.4 bits (80), Expect = 0.32
Identities = 17/39 (43%), Positives = 24/39 (60%), Gaps = 3/39 (7%)
Frame = -3
Query: 465 DIIFWGNVHPMFVALPYLHQSYGRVII---NASLLPLPR 358
DI FWG V+ A PYL S GR+++ ++S +P PR
Sbjct: 155 DINFWGYVYMTRFAAPYLRNSRGRIVVLSSSSSWMPTPR 193
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,790,572
Number of Sequences: 1393205
Number of extensions: 8156712
Number of successful extensions: 20424
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 19652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20305
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
