Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003256A_C01 KMC003256A_c01
(474 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA91170.1| eukaryotic release factor 1 homolog 116 1e-25
ref|NP_172752.1| eukaryotic peptide chain release factor subunit... 116 1e-25
pir||S31445 omnipotent suppressor protein SUP1 homolog (clone A1... 116 1e-25
sp|P35614|ERFC_ARATH Eukaryotic peptide chain release factor sub... 115 2e-25
ref|NP_189295.2| Eukaryotic peptide chain release factor subunit... 115 2e-25
>gb|AAA91170.1| eukaryotic release factor 1 homolog
Length = 141
Score = 116 bits (290), Expect = 1e-25
Identities = 53/59 (89%), Positives = 57/59 (95%)
Frame = -1
Query: 474 NFRDSVTSAELEVQEKLPLLEWFANEYKRFGCSLEFVTNKSQEGSQFCRGFGGIGGILR 298
NF DS T+AELEVQEK+PLLEWFANEYKRFGC+LEFVTNKSQEGSQFCRGFGGIGG+LR
Sbjct: 62 NFHDSETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGMLR 120
>ref|NP_172752.1| eukaryotic peptide chain release factor subunit 1, putative;
protein id: At1g12920.1, supported by cDNA: 26360.,
supported by cDNA: gi_14334579 [Arabidopsis thaliana]
gi|18206253|sp|Q9LPV8|ERFB_ARATH Eukaryotic peptide
chain release factor subunit 1-2 (eRF1-2) (Eukaryotic
release factor 1-2) (Omnipotent suppressor protein 1
homolog 2) (SUP1 homolog 2) gi|25299659|pir||H86262
Eukaryotic peptide chain release factor chain 1-2 -
Arabidopsis thaliana
gi|8698738|gb|AAF78496.1|AC012187_16 Identical to an
omnipotent supressor protein SUP1 homolog (fragment)
from Arabidopsis thaliana gi|322525 and is a member of
the eRF1 PF|01605 family. ESTs gb|Z18188, gb|H36000,
gb|AA651147, gb|W43754 come from this gene
gi|14334580|gb|AAK59469.1| putative eukaryotic peptide
chain release factor subunit 1 [Arabidopsis thaliana]
gi|21554757|gb|AAM63682.1| eukaryotic peptide chain
release factor subunit 1, putative [Arabidopsis
thaliana]
Length = 434
Score = 116 bits (290), Expect = 1e-25
Identities = 53/59 (89%), Positives = 57/59 (95%)
Frame = -1
Query: 474 NFRDSVTSAELEVQEKLPLLEWFANEYKRFGCSLEFVTNKSQEGSQFCRGFGGIGGILR 298
NF DS T+AELEVQEK+PLLEWFANEYKRFGC+LEFVTNKSQEGSQFCRGFGGIGG+LR
Sbjct: 355 NFHDSETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGMLR 413
>pir||S31445 omnipotent suppressor protein SUP1 homolog (clone A18) -
Arabidopsis thaliana (fragment) gi|16512|emb|CAA49171.1|
similar to yeast omnipotent suppressor protein SUP1
(SUP45)~ORF [Arabidopsis thaliana]
Length = 304
Score = 116 bits (290), Expect = 1e-25
Identities = 53/59 (89%), Positives = 57/59 (95%)
Frame = -1
Query: 474 NFRDSVTSAELEVQEKLPLLEWFANEYKRFGCSLEFVTNKSQEGSQFCRGFGGIGGILR 298
NF DS T+AELEVQEK+PLLEWFANEYKRFGC+LEFVTNKSQEGSQFCRGFGGIGG+LR
Sbjct: 225 NFHDSETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGMLR 283
>sp|P35614|ERFC_ARATH Eukaryotic peptide chain release factor subunit 1-3 (eRF1-3)
(Eukaryotic release factor 1-3) (Omnipotent suppressor
protein 1 homolog 3) (SUP1 homolog 3)
gi|322554|pir||S31328 omnipotent suppressor protein SUP1
homolog (clone G18) - Arabidopsis thaliana
gi|16514|emb|CAA49172.1| similar to yeast omnipotent
suppressor protein SUP1 (SUP45) [Arabidopsis thaliana]
gi|1402882|emb|CAA66813.1| eukaryotic early release
factor subunit 1-like protein [Arabidopsis thaliana]
gi|1495249|emb|CAA66118.1| eRF1-3 [Arabidopsis thaliana]
gi|15215648|gb|AAK91369.1| MFE16.15/MFE16.15
[Arabidopsis thaliana] gi|21435997|gb|AAM51576.1|
At3g26618/MFE16.15 [Arabidopsis thaliana]
Length = 435
Score = 115 bits (288), Expect = 2e-25
Identities = 52/59 (88%), Positives = 57/59 (96%)
Frame = -1
Query: 474 NFRDSVTSAELEVQEKLPLLEWFANEYKRFGCSLEFVTNKSQEGSQFCRGFGGIGGILR 298
NF D+ T+AELEVQEK+PLLEWFANEYKRFGC+LEFVTNKSQEGSQFCRGFGGIGG+LR
Sbjct: 356 NFHDAETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGLLR 414
>ref|NP_189295.2| Eukaryotic peptide chain release factor subunit 1 (ERF1); protein
id: At3g26618.1, supported by cDNA: gi_15215647
[Arabidopsis thaliana]
Length = 387
Score = 115 bits (288), Expect = 2e-25
Identities = 52/59 (88%), Positives = 57/59 (96%)
Frame = -1
Query: 474 NFRDSVTSAELEVQEKLPLLEWFANEYKRFGCSLEFVTNKSQEGSQFCRGFGGIGGILR 298
NF D+ T+AELEVQEK+PLLEWFANEYKRFGC+LEFVTNKSQEGSQFCRGFGGIGG+LR
Sbjct: 308 NFHDAETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGLLR 366
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,787,938
Number of Sequences: 1393205
Number of extensions: 8343887
Number of successful extensions: 22507
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 21930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22485
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
