Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003255A_C01 KMC003255A_c01
(462 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195217.1| DEAD/DEAH box RNA helicase protein, putative; p... 84 9e-16
pir||T51745 RNA helicase RH16 [imported] - Arabidopsis thaliana ... 78 5e-14
gb|AAO38473.1| putative RNA helicase, 5'-partial [Oryza sativa (... 76 1e-13
emb|CAA21924.1| dead box helicase [Candida albicans] 36 0.22
ref|NP_013378.1| Dead-Box Protein 9; Dbp9p [Saccharomyces cerevi... 33 1.1
>ref|NP_195217.1| DEAD/DEAH box RNA helicase protein, putative; protein id:
At4g34910.1 [Arabidopsis thaliana]
gi|7446109|pir||T10237 RNA helicase RH16 - Arabidopsis
thaliana gi|5123708|emb|CAB45452.1| RNA helicase (RH16)
[Arabidopsis thaliana] gi|7270442|emb|CAB80208.1| RNA
helicase (RH16) [Arabidopsis thaliana]
gi|27754373|gb|AAO22635.1| putative DEAD/DEAH box RNA
helicase protein [Arabidopsis thaliana]
gi|28394057|gb|AAO42436.1| putative DEAD/DEAH box RNA
helicase protein [Arabidopsis thaliana]
Length = 626
Score = 83.6 bits (205), Expect = 9e-16
Identities = 46/89 (51%), Positives = 56/89 (62%), Gaps = 5/89 (5%)
Frame = -3
Query: 460 DLDLLKHDKVLSKNAPPLHLRNVPDYLLD*TTKEARDMVKLASDAMGNNNNRRRGG---- 293
DLDLL+HDK LSK AP HL+++P+YL+D T+EA MVKLA AMGN GG
Sbjct: 524 DLDLLRHDKPLSKTAPAPHLKDIPEYLVDAKTQEASKMVKLARAAMGNTRRSGGGGGRNN 583
Query: 292 -SKKKIRKSGDPLKAISAGVSKRPNQGTK 209
+KK+ RK DPLK + SKR G K
Sbjct: 584 KNKKRSRKGSDPLKTFNPNGSKRGAVGQK 612
>pir||T51745 RNA helicase RH16 [imported] - Arabidopsis thaliana (fragment)
gi|3776007|emb|CAA09206.1| RNA helicase [Arabidopsis
thaliana]
Length = 259
Score = 77.8 bits (190), Expect = 5e-14
Identities = 41/74 (55%), Positives = 50/74 (67%), Gaps = 5/74 (6%)
Frame = -3
Query: 460 DLDLLKHDKVLSKNAPPLHLRNVPDYLLD*TTKEARDMVKLASDAMGNNNNRRRGG---- 293
DLDLL+HDK LSK AP HL+++P+YL+D T+EA MVKLA AMGN GG
Sbjct: 182 DLDLLRHDKPLSKTAPAPHLKDIPEYLVDAKTQEASKMVKLARAAMGNTRRSGGGGGRNN 241
Query: 292 -SKKKIRKSGDPLK 254
+KK+ RK DPLK
Sbjct: 242 KNKKRSRKGSDPLK 255
>gb|AAO38473.1| putative RNA helicase, 5'-partial [Oryza sativa (japonica
cultivar-group)]
Length = 299
Score = 76.3 bits (186), Expect = 1e-13
Identities = 48/90 (53%), Positives = 59/90 (65%), Gaps = 3/90 (3%)
Frame = -3
Query: 460 DLDLLKHDKVLSKNAPPLHLRNVPDYLLD*TTKEARDMVKLASDAMGNNNNRRRG--GSK 287
DLDLLKHDK+LS P HLR+VP+YL+D TTKEA ++VKL+ AM + RRR G K
Sbjct: 199 DLDLLKHDKLLSNKEIPAHLRDVPEYLIDPTTKEASNVVKLSRAAMDIDKPRRRKRMGFK 258
Query: 286 KKIRKSGDPLKAISA-GVSKRPNQGTKRFD 200
+S DPLK SA G S+R +G K D
Sbjct: 259 GGSGRSSDPLKTFSAEGKSRR--RGRKERD 286
>emb|CAA21924.1| dead box helicase [Candida albicans]
Length = 574
Score = 35.8 bits (81), Expect = 0.22
Identities = 24/70 (34%), Positives = 33/70 (46%)
Frame = -3
Query: 460 DLDLLKHDKVLSKNAPPLHLRNVPDYLLD*TTKEARDMVKLASDAMGNNNNRRRGGSKKK 281
DL L+HDK L L+NVP YLL + ++ D+ + N + K K
Sbjct: 504 DLASLRHDKELHPARIQSQLKNVPQYLLPESARQ--DVKNIGFVPFHKNKIHKHRKGKGK 561
Query: 280 IRKSGDPLKA 251
RK DPLK+
Sbjct: 562 GRKKVDPLKS 571
>ref|NP_013378.1| Dead-Box Protein 9; Dbp9p [Saccharomyces cerevisiae]
gi|2500536|sp|Q06218|DBP9_YEAST Probable ATP-dependent
RNA helicase DBP9 (DEAD-box protein 9)
gi|1077400|pir||S51412 hypothetical protein YLR276c -
yeast (Saccharomyces cerevisiae)
gi|577189|gb|AAB67366.1| Ylr276cp [Saccharomyces
cerevisiae]
Length = 594
Score = 33.5 bits (75), Expect = 1.1
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -3
Query: 460 DLDLLKHDKVLSKNAPPLHLRNVPDYLLD*TTKEARDMVKLA--SDAMGNNNNRRRGGSK 287
+L L+HDK L HL+ VPDYLL + + VK +A +++++ SK
Sbjct: 522 ELQSLRHDKELHPARVQQHLKRVPDYLLPESARGNGTKVKFVPFHNAKKRHSHKKGRVSK 581
Query: 286 KKIRKSGDPLK 254
K K DPLK
Sbjct: 582 PKNGKV-DPLK 591
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,833,587
Number of Sequences: 1393205
Number of extensions: 8789973
Number of successful extensions: 23252
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23217
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
