Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003254A_C01 KMC003254A_c01
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61006.1| unknown [Arabidopsis thaliana] 149 2e-35
ref|NP_565086.1| expressed protein; protein id: At1g74450.1, sup... 149 2e-35
ref|NP_564062.1| expressed protein; protein id: At1g18740.1, sup... 140 2e-32
gb|AAM65601.1| unknown [Arabidopsis thaliana] 140 2e-32
emb|CAB53491.1| CAA303718.1 protein [Oryza sativa] 131 6e-30
>gb|AAM61006.1| unknown [Arabidopsis thaliana]
Length = 397
Score = 149 bits (377), Expect = 2e-35
Identities = 72/114 (63%), Positives = 91/114 (79%)
Frame = -2
Query: 604 HFSVPRQFLWAAPMTSLHDRILEESRKRERKNSCGLMREIQQIEKCARAMNELGDSVQFP 425
HF+VPR + W + SLHDRI+EES+KRERKN+CGL++EI Q EK +R MNEL DSVQFP
Sbjct: 279 HFNVPRNYQWGGSLMSLHDRIIEESKKRERKNTCGLLKEIHQFEKTSRLMNELVDSVQFP 338
Query: 424 LSEKKEEEVRHRVQDVVSVCEDLKEGLDPLECQVREVFRRIVCSRMDGLDSLGR 263
LSE+KE EVR RV+++ + E LK GLDP E +VREVF RIV SR +GLD++G+
Sbjct: 339 LSEEKEMEVRERVEELGKLQEALKNGLDPFERKVREVFHRIVRSRTEGLDTVGK 392
>ref|NP_565086.1| expressed protein; protein id: At1g74450.1, supported by cDNA:
108193., supported by cDNA: gi_16226873, supported by
cDNA: gi_18176415 [Arabidopsis thaliana]
gi|25354336|pir||D96773 unknown protein F1M20.13
[imported] - Arabidopsis thaliana
gi|12324802|gb|AAG52364.1|AC011765_16 unknown protein;
39057-40250 [Arabidopsis thaliana]
gi|16226874|gb|AAL16287.1|AF428357_1 At1g74450/F1M20_13
[Arabidopsis thaliana] gi|18176416|gb|AAL60040.1|
unknown protein [Arabidopsis thaliana]
gi|22136856|gb|AAM91772.1| unknown protein [Arabidopsis
thaliana]
Length = 397
Score = 149 bits (377), Expect = 2e-35
Identities = 72/114 (63%), Positives = 91/114 (79%)
Frame = -2
Query: 604 HFSVPRQFLWAAPMTSLHDRILEESRKRERKNSCGLMREIQQIEKCARAMNELGDSVQFP 425
HF+VPR + W + SLHDRI+EES+KRERKN+CGL++EI Q EK +R MNEL DSVQFP
Sbjct: 279 HFNVPRNYQWGGSLMSLHDRIIEESKKRERKNTCGLLKEIHQFEKTSRLMNELVDSVQFP 338
Query: 424 LSEKKEEEVRHRVQDVVSVCEDLKEGLDPLECQVREVFRRIVCSRMDGLDSLGR 263
LSE+KE EVR RV+++ + E LK GLDP E +VREVF RIV SR +GLD++G+
Sbjct: 339 LSEEKEMEVRERVEELGKLQEALKNGLDPFERKVREVFHRIVRSRTEGLDTVGK 392
>ref|NP_564062.1| expressed protein; protein id: At1g18740.1, supported by cDNA:
40753., supported by cDNA: gi_14517471 [Arabidopsis
thaliana] gi|25354338|pir||C86321 hypothetical protein
F6A14.15 - Arabidopsis thaliana
gi|6730709|gb|AAF27104.1|AC011809_13 Unknown protein
[Arabidopsis thaliana] gi|14517472|gb|AAK62626.1|
At1g18740/F6A14_15 [Arabidopsis thaliana]
gi|22136562|gb|AAM91067.1| At1g18740/F6A14_15
[Arabidopsis thaliana]
Length = 382
Score = 140 bits (352), Expect = 2e-32
Identities = 68/112 (60%), Positives = 88/112 (77%)
Frame = -2
Query: 604 HFSVPRQFLWAAPMTSLHDRILEESRKRERKNSCGLMREIQQIEKCARAMNELGDSVQFP 425
+F VPR F WAAP+ SLHD+I+EES++R+RKN CGL++EI +IEK +R MNEL DS+ FP
Sbjct: 271 NFFVPRHFQWAAPVMSLHDKIVEESKRRDRKNCCGLLKEIDRIEKSSRLMNELIDSIHFP 330
Query: 424 LSEKKEEEVRHRVQDVVSVCEDLKEGLDPLECQVREVFRRIVCSRMDGLDSL 269
L++ KE EV+ RV ++V V E L+ GLDP E +VREVF RIV SR + LDSL
Sbjct: 331 LNDDKEVEVKQRVDELVQVREALRNGLDPFERKVREVFHRIVRSRTESLDSL 382
>gb|AAM65601.1| unknown [Arabidopsis thaliana]
Length = 382
Score = 140 bits (352), Expect = 2e-32
Identities = 68/112 (60%), Positives = 88/112 (77%)
Frame = -2
Query: 604 HFSVPRQFLWAAPMTSLHDRILEESRKRERKNSCGLMREIQQIEKCARAMNELGDSVQFP 425
+F VPR F WAAP+ SLHD+I+EES++R+RKN CGL++EI +IEK +R MNEL DS+ FP
Sbjct: 271 NFFVPRHFQWAAPVMSLHDKIVEESKRRDRKNCCGLLKEIDRIEKSSRLMNELIDSIHFP 330
Query: 424 LSEKKEEEVRHRVQDVVSVCEDLKEGLDPLECQVREVFRRIVCSRMDGLDSL 269
L++ KE EV+ RV ++V V E L+ GLDP E +VREVF RIV SR + LDSL
Sbjct: 331 LNDDKEVEVKQRVDELVQVREALRNGLDPFERKVREVFHRIVRSRTESLDSL 382
>emb|CAB53491.1| CAA303718.1 protein [Oryza sativa]
Length = 425
Score = 131 bits (330), Expect = 6e-30
Identities = 60/112 (53%), Positives = 87/112 (77%)
Frame = -2
Query: 598 SVPRQFLWAAPMTSLHDRILEESRKRERKNSCGLMREIQQIEKCARAMNELGDSVQFPLS 419
+VPR F WA P+ +L DRIL+ES+K++RK+SCGL++EI QIE+C+R + E+ D+ +FPL+
Sbjct: 309 AVPRTFPWAGPLITLFDRILDESKKKDRKHSCGLLKEIHQIERCSRQLMEVTDAAEFPLA 368
Query: 418 EKKEEEVRHRVQDVVSVCEDLKEGLDPLECQVREVFRRIVCSRMDGLDSLGR 263
+ K+ EV+ Q++V VC LK+GLDPLE QVRE+F R+V +R + LD L R
Sbjct: 369 DDKDSEVQEATQELVQVCGSLKDGLDPLERQVREMFHRVVRTRTEILDYLSR 420
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,562,228
Number of Sequences: 1393205
Number of extensions: 13074026
Number of successful extensions: 78741
Number of sequences better than 10.0: 963
Number of HSP's better than 10.0 without gapping: 54151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70073
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
