Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003252A_C01 KMC003252A_c01
(734 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q42783|BCCP_SOYBN Biotin carboxyl carrier protein of acetyl-C... 183 2e-45
gb|AAO66472.1| biotin carboxylase carrier protein [Lycopersicon ... 167 1e-40
gb|AAG44776.1|AF271796_1 biotin carboxyl carrier protein subunit... 159 3e-38
gb|AAG44765.1|AF271071_1 biotin carboxyl carrier protein subunit... 159 5e-38
emb|CAA62263.1| Biotin carboxyl carrier protein [Brassica napus]... 155 6e-37
>sp|Q42783|BCCP_SOYBN Biotin carboxyl carrier protein of acetyl-CoA carboxylase,
chloroplast precursor (BCCP) gi|7442282|pir||T06600
acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl
carrier chain precursor - soybean
gi|1143319|gb|AAB67836.1| biotin carboxyl carrier
protein precursor gi|8886431|gb|AAF80463.1|AF162283_1
acetyl-CoA carboxylase [Glycine max]
Length = 262
Score = 183 bits (465), Expect = 2e-45
Identities = 89/116 (76%), Positives = 104/116 (88%), Gaps = 1/116 (0%)
Frame = -3
Query: 732 PSPTMPPVAT-ASNPAPAVAASTPSPSTSLAIKSAKSSHPPLKSPMAGTFYRSPAPGEPA 556
P P +PP AS PAP +A +TP+P+++ A+KSAKSS PPLKSPMAGTFYRSPAPGEP+
Sbjct: 147 PPPALPPPPVPASTPAPTLARATPTPTSAPAVKSAKSSLPPLKSPMAGTFYRSPAPGEPS 206
Query: 555 FVKVGDKVKKGQVLCIIEAMKLMNEIEADQSGTVVDVIAEDGKSVSVDTPLFVIEP 388
FVKVGDKVKKGQV+CIIEAMKLMNEIEADQSGT+V+++AED KSVSVDTPLFVI+P
Sbjct: 207 FVKVGDKVKKGQVVCIIEAMKLMNEIEADQSGTIVEIVAEDAKSVSVDTPLFVIQP 262
>gb|AAO66472.1| biotin carboxylase carrier protein [Lycopersicon esculentum]
Length = 285
Score = 167 bits (424), Expect = 1e-40
Identities = 88/114 (77%), Positives = 97/114 (84%)
Frame = -3
Query: 729 SPTMPPVATASNPAPAVAASTPSPSTSLAIKSAKSSHPPLKSPMAGTFYRSPAPGEPAFV 550
S PP A A +PAP TP+PS + A KSA SS PPLKSPMAGTFYRSPAPGEPAFV
Sbjct: 176 SNASPPPAPAPSPAPI---QTPAPSPAAA-KSADSSLPPLKSPMAGTFYRSPAPGEPAFV 231
Query: 549 KVGDKVKKGQVLCIIEAMKLMNEIEADQSGTVVDVIAEDGKSVSVDTPLFVIEP 388
KVGDKV+KGQVLCIIEAMKLMNEIEAD+SGT+V+V+AEDGK VSVDTPLFVI+P
Sbjct: 232 KVGDKVQKGQVLCIIEAMKLMNEIEADRSGTIVEVVAEDGKPVSVDTPLFVIKP 285
>gb|AAG44776.1|AF271796_1 biotin carboxyl carrier protein subunit [Glycine max]
Length = 284
Score = 159 bits (403), Expect = 3e-38
Identities = 87/118 (73%), Positives = 95/118 (79%), Gaps = 9/118 (7%)
Frame = -3
Query: 714 PVATASNPA--PAVAASTP--SPSTSLA-----IKSAKSSHPPLKSPMAGTFYRSPAPGE 562
P T S PA P+VA STP SPS+ A K++KSSHP LK PMAGTFYRSPAPGE
Sbjct: 167 PYPTNSLPAAPPSVATSTPASSPSSKAAPALPPAKASKSSHPALKCPMAGTFYRSPAPGE 226
Query: 561 PAFVKVGDKVKKGQVLCIIEAMKLMNEIEADQSGTVVDVIAEDGKSVSVDTPLFVIEP 388
P FVKVGDKV+KGQV+CIIEAMKLMNEIEADQSGTV +V+AEDGK VSVDTPLFVI P
Sbjct: 227 PPFVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTVAEVVAEDGKPVSVDTPLFVIVP 284
>gb|AAG44765.1|AF271071_1 biotin carboxyl carrier protein subunit precursor [Glycine max]
Length = 284
Score = 159 bits (401), Expect = 5e-38
Identities = 87/118 (73%), Positives = 94/118 (78%), Gaps = 9/118 (7%)
Frame = -3
Query: 714 PVATASNPA--PAVAASTP--SPSTSLA-----IKSAKSSHPPLKSPMAGTFYRSPAPGE 562
P T S PA P VA STP SPS+ A K++KSSHP LK PMAGTFYRSPAPGE
Sbjct: 167 PYPTNSLPAAPPPVATSTPASSPSSKAAPALPPAKASKSSHPALKCPMAGTFYRSPAPGE 226
Query: 561 PAFVKVGDKVKKGQVLCIIEAMKLMNEIEADQSGTVVDVIAEDGKSVSVDTPLFVIEP 388
P FVKVGDKV+KGQV+CIIEAMKLMNEIEADQSGTV +V+AEDGK VSVDTPLFVI P
Sbjct: 227 PPFVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTVAEVVAEDGKPVSVDTPLFVIVP 284
>emb|CAA62263.1| Biotin carboxyl carrier protein [Brassica napus]
gi|1589042|prf||2210244C Ac-CoA carboxylase:ISOTYPE=bp3
Length = 162
Score = 155 bits (392), Expect = 6e-37
Identities = 77/111 (69%), Positives = 89/111 (79%)
Frame = -3
Query: 720 MPPVATASNPAPAVAASTPSPSTSLAIKSAKSSHPPLKSPMAGTFYRSPAPGEPAFVKVG 541
MPP S PAP+ A +T P+T+ SSHPPLKSPMAGTFYRSP PGEP FVKVG
Sbjct: 57 MPPSPPVSLPAPSSAPATEKPATA-----PSSSHPPLKSPMAGTFYRSPGPGEPPFVKVG 111
Query: 540 DKVKKGQVLCIIEAMKLMNEIEADQSGTVVDVIAEDGKSVSVDTPLFVIEP 388
DKV+KGQV+CIIEAMKLMNEIEA++SGT+ +++AEDGK VSVDTPLF I P
Sbjct: 112 DKVQKGQVVCIIEAMKLMNEIEAEKSGTITELLAEDGKPVSVDTPLFTIVP 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 613,230,394
Number of Sequences: 1393205
Number of extensions: 14156857
Number of successful extensions: 80938
Number of sequences better than 10.0: 1000
Number of HSP's better than 10.0 without gapping: 61247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76555
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
