Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003248A_C01 KMC003248A_c01
(674 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194559.2| predicted proline-rich protein; protein id: At4... 97 2e-19
pir||T09046 proline-rich protein F26K10.180 - Arabidopsis thalia... 97 2e-19
dbj|BAB89688.1| P0503C12.12 [Oryza sativa (japonica cultivar-gro... 96 4e-19
dbj|BAB92521.1| OJ1276_B06.30 [Oryza sativa (japonica cultivar-g... 55 7e-07
ref|NP_186805.1| unknown protein; protein id: At3g01560.1 [Arabi... 54 3e-06
>ref|NP_194559.2| predicted proline-rich protein; protein id: At4g28300.1, supported
by cDNA: gi_17380877, supported by cDNA: gi_20465846
[Arabidopsis thaliana] gi|17380878|gb|AAL36251.1|
putative proline-rich protein [Arabidopsis thaliana]
gi|20465847|gb|AAM20028.1| putative proline-rich protein
[Arabidopsis thaliana]
Length = 496
Score = 97.1 bits (240), Expect = 2e-19
Identities = 60/122 (49%), Positives = 70/122 (57%), Gaps = 9/122 (7%)
Frame = -3
Query: 663 PPGNAYMMYDGEGGRAHHPSQPPHFAQSGYPPTSASLQNPAGHNIMVRNPNPTQF----- 499
P G A MY EGGR +P P Q + LQ P G +P P Q
Sbjct: 384 PSGYANAMY--EGGRMQYPPPQPQQQQQ----QAHYLQGPQGGGY---SPQPHQAGGGNI 434
Query: 498 ----VRNHPYSDLIEKLVSMGFRGEHVVSVIQRMEESGQPIDFNSVLDRLNVHGSVGPQR 331
V Y +LIEKLVSMGFRG+HV++VIQRMEESGQPIDFN++LDRL+ S GP R
Sbjct: 435 GAPPVLRSKYGELIEKLVSMGFRGDHVMAVIQRMEESGQPIDFNTLLDRLSGQSSGGPPR 494
Query: 330 GW 325
GW
Sbjct: 495 GW 496
>pir||T09046 proline-rich protein F26K10.180 - Arabidopsis thaliana
gi|7269684|emb|CAB79632.1| predicted proline-rich
protein [Arabidopsis thaliana]
Length = 508
Score = 97.1 bits (240), Expect = 2e-19
Identities = 60/122 (49%), Positives = 70/122 (57%), Gaps = 9/122 (7%)
Frame = -3
Query: 663 PPGNAYMMYDGEGGRAHHPSQPPHFAQSGYPPTSASLQNPAGHNIMVRNPNPTQF----- 499
P G A MY EGGR +P P Q + LQ P G +P P Q
Sbjct: 396 PSGYANAMY--EGGRMQYPPPQPQQQQQ----QAHYLQGPQGGGY---SPQPHQAGGGNI 446
Query: 498 ----VRNHPYSDLIEKLVSMGFRGEHVVSVIQRMEESGQPIDFNSVLDRLNVHGSVGPQR 331
V Y +LIEKLVSMGFRG+HV++VIQRMEESGQPIDFN++LDRL+ S GP R
Sbjct: 447 GAPPVLRSKYGELIEKLVSMGFRGDHVMAVIQRMEESGQPIDFNTLLDRLSGQSSGGPPR 506
Query: 330 GW 325
GW
Sbjct: 507 GW 508
>dbj|BAB89688.1| P0503C12.12 [Oryza sativa (japonica cultivar-group)]
Length = 595
Score = 95.9 bits (237), Expect = 4e-19
Identities = 52/126 (41%), Positives = 69/126 (54%), Gaps = 11/126 (8%)
Frame = -3
Query: 669 LSPPGNAYMMYDGEGGRAHHPSQPPHFAQSGY------PPTSASLQN-----PAGHNIMV 523
L PP +GG A P P + GY PP+ S PA N+ +
Sbjct: 470 LPPPSQGSFGPPSKGGYAGPPQYAPQGSSHGYNTAYGYPPSGPSAAQAPQMPPAPGNVGM 529
Query: 522 RNPNPTQFVRNHPYSDLIEKLVSMGFRGEHVVSVIQRMEESGQPIDFNSVLDRLNVHGSV 343
+P Q +R HPY ++IEK ++MG+ E V++VIQRM ESGQP+DFN++LDRLN GS
Sbjct: 530 SHPGSHQMMRGHPYGEMIEKAITMGYPREQVMNVIQRMTESGQPMDFNTLLDRLNEAGSG 589
Query: 342 GPQRGW 325
P R W
Sbjct: 590 APPRAW 595
>dbj|BAB92521.1| OJ1276_B06.30 [Oryza sativa (japonica cultivar-group)]
Length = 699
Score = 55.5 bits (132), Expect = 7e-07
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Frame = -3
Query: 624 GRAHHPSQPPHFAQSGYPPTSASLQN----PAGHNI---MVRNPNPTQFVRNH-PYSDLI 469
G A S P FA SG P+S N P + + N +P+ N P D++
Sbjct: 590 GNAGMKSSPSPFAPSG--PSSGGSGNYGRLPTAQILPQAVPINSSPSGSSGNRVPVDDVV 647
Query: 468 EKLVSMGFRGEHVVSVIQRMEESGQPIDFNSVLDRLNVHGSV-GPQRGWSG 319
EK+ +MGF E V + ++R+ E+GQ +D N VLD+L V PQ+GW G
Sbjct: 648 EKVATMGFSREQVRATVRRLTENGQNVDLNVVLDKLMNDSDVQQPQKGWFG 698
>ref|NP_186805.1| unknown protein; protein id: At3g01560.1 [Arabidopsis thaliana]
gi|6016715|gb|AAF01541.1|AC009325_11 unknown protein
[Arabidopsis thaliana]
Length = 493
Score = 53.5 bits (127), Expect = 3e-06
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 26/136 (19%)
Frame = -3
Query: 666 SPPGNAYMMYDGEGGRAHH-------------------PSQPPHFAQSGYPPTSASLQNP 544
+PP MYDG GGR++ ++PPH + +G S P
Sbjct: 351 NPPQPQPSMYDGAGGRSNSGFPSGYLSEPYTYSGSPMSSAKPPHISSNGTGYPQLSNSRP 410
Query: 543 AGHNI----MVRNPNPTQFVRNH---PYSDLIEKLVSMGFRGEHVVSVIQRMEESGQPID 385
H + V + + R+ P D+I+++ +MGF + V + ++++ E+GQ +D
Sbjct: 411 LPHALPMVSAVSSGGGSSSPRSESRAPIDDVIDRVTTMGFPRDQVRATVRKLTENGQAVD 470
Query: 384 FNSVLDRLNVHGSVGP 337
N VLD+L G P
Sbjct: 471 LNVVLDKLMNEGGAPP 486
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,446,197
Number of Sequences: 1393205
Number of extensions: 13963740
Number of successful extensions: 36551
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 34427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36480
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
