Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003246A_C01 KMC003246A_c01
(671 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565887.1| expressed protein; protein id: At2g38310.1, sup... 84 2e-15
ref|NP_565928.1| expressed protein; protein id: At2g40330.1, sup... 77 2e-13
pir||B84828 hypothetical protein At2g40330 [imported] - Arabidop... 77 2e-13
ref|NP_196163.1| putative protein; protein id: At5g05440.1, supp... 75 1e-12
pir||A86144 hypothetical protein F6F3.16 - Arabidopsis thaliana ... 72 7e-12
>ref|NP_565887.1| expressed protein; protein id: At2g38310.1, supported by cDNA:
32244., supported by cDNA: gi_14517501, supported by
cDNA: gi_15809747 [Arabidopsis thaliana]
gi|7487162|pir||T02514 hypothetical protein At2g38310
[imported] - Arabidopsis thaliana
gi|3395441|gb|AAC28773.1| expressed protein [Arabidopsis
thaliana] gi|14517502|gb|AAK62641.1| At2g38310/T19C21.20
[Arabidopsis thaliana] gi|15809748|gb|AAL06802.1|
At2g38310/T19C21.20 [Arabidopsis thaliana]
gi|21592755|gb|AAM64704.1| unknown [Arabidopsis
thaliana]
Length = 207
Score = 83.6 bits (205), Expect = 2e-15
Identities = 41/52 (78%), Positives = 44/52 (83%)
Frame = -2
Query: 670 VTTVHGDGNGGTVVIESYVVDVPHGNTKEETCIFVDTIVRCNLQSLAQIAEN 515
VTT+H GTVV+ESYVVDVP GNTKEETC FVD IVRCNLQSLA+IAEN
Sbjct: 145 VTTLHPSPISGTVVVESYVVDVPPGNTKEETCDFVDVIVRCNLQSLAKIAEN 196
>ref|NP_565928.1| expressed protein; protein id: At2g40330.1, supported by cDNA:
6787. [Arabidopsis thaliana] gi|20198019|gb|AAD25668.2|
expressed protein [Arabidopsis thaliana]
gi|21594278|gb|AAM65989.1| unknown [Arabidopsis
thaliana] gi|28393741|gb|AAO42281.1| unknown protein
[Arabidopsis thaliana] gi|28973407|gb|AAO64028.1|
unknown protein [Arabidopsis thaliana]
Length = 215
Score = 77.0 bits (188), Expect = 2e-13
Identities = 40/57 (70%), Positives = 43/57 (75%), Gaps = 5/57 (8%)
Frame = -2
Query: 670 VTTVH-----GDGNGGTVVIESYVVDVPHGNTKEETCIFVDTIVRCNLQSLAQIAEN 515
VTTVH DG T V+ESYVVDVP GN KEETC F DTIVRCNLQSLA++AEN
Sbjct: 154 VTTVHESEEDSDGKKRTRVVESYVVDVPAGNDKEETCSFADTIVRCNLQSLAKLAEN 210
>pir||B84828 hypothetical protein At2g40330 [imported] - Arabidopsis thaliana
gi|4588009|gb|AAD25950.1|AF085279_23 hypothetical
protein [Arabidopsis thaliana]
Length = 175
Score = 77.0 bits (188), Expect = 2e-13
Identities = 40/57 (70%), Positives = 43/57 (75%), Gaps = 5/57 (8%)
Frame = -2
Query: 670 VTTVH-----GDGNGGTVVIESYVVDVPHGNTKEETCIFVDTIVRCNLQSLAQIAEN 515
VTTVH DG T V+ESYVVDVP GN KEETC F DTIVRCNLQSLA++AEN
Sbjct: 114 VTTVHESEEDSDGKKRTRVVESYVVDVPAGNDKEETCSFADTIVRCNLQSLAKLAEN 170
>ref|NP_196163.1| putative protein; protein id: At5g05440.1, supported by cDNA:
117347., supported by cDNA: gi_15529253, supported by
cDNA: gi_16974394 [Arabidopsis thaliana]
gi|10176756|dbj|BAB09987.1|
gene_id:K18I23.25~pir||T02514~similar to unknown protein
[Arabidopsis thaliana] gi|15529254|gb|AAK97721.1|
AT5g05440/K18I23_25 [Arabidopsis thaliana]
gi|16974395|gb|AAL31123.1| AT5g05440/K18I23_25
[Arabidopsis thaliana] gi|21536994|gb|AAM61335.1|
unknown [Arabidopsis thaliana]
gi|23397174|gb|AAN31870.1| unknown protein [Arabidopsis
thaliana]
Length = 203
Score = 74.7 bits (182), Expect = 1e-12
Identities = 35/48 (72%), Positives = 41/48 (84%)
Frame = -2
Query: 670 VTTVHGDGNGGTVVIESYVVDVPHGNTKEETCIFVDTIVRCNLQSLAQ 527
VTT+H + GTVV+ESY+VDVP GNT+EET FVDTIVRCNLQSLA+
Sbjct: 151 VTTLHASDDEGTVVVESYIVDVPPGNTEEETLSFVDTIVRCNLQSLAR 198
>pir||A86144 hypothetical protein F6F3.16 - Arabidopsis thaliana
gi|9665155|gb|AAF97339.1|AC023628_20 Unknown protein
[Arabidopsis thaliana]
Length = 186
Score = 72.0 bits (175), Expect = 7e-12
Identities = 32/56 (57%), Positives = 44/56 (78%), Gaps = 3/56 (5%)
Frame = -2
Query: 670 VTTVHGD---GNGGTVVIESYVVDVPHGNTKEETCIFVDTIVRCNLQSLAQIAENM 512
+ TVH + G GT+VIES+VVDVP GNTK+ETC FV+ ++RCNL+SLA ++E +
Sbjct: 124 ILTVHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVSERL 179
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 588,002,801
Number of Sequences: 1393205
Number of extensions: 12878816
Number of successful extensions: 36692
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 34505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36557
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
